CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68463
CDX81417
CDY18585
CDY19576
CDY27538
CDY37312
CDY50073
CDY60454
CDY70544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	CDY19576	AT3G21175.1	21798944
AT5G40160.1	CDY27538	AT3G21175.1	21798944
AT5G40160.1	CDY37312	AT3G21175.1	21798944
AT5G40160.1	CDY50073	AT3G21175.1	21798944
AT5G40160.1	CDX68463	AT3G48550.1	21798944
AT5G40160.1	CDY60454	AT3G48550.1	21798944
AT5G40160.1	CDY70544	AT3G48550.1	21798944
AT5G40160.1	CDX81417	AT5G66055.1	17092312
AT5G40160.1	CDY18585	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44587	Canola	plastid	93.38	93.08
Bra025602.1-P	Field mustard	plastid	80.76	79.75
AT5G40160.1	Thale cress	plastid	78.23	78.73
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	28.39	71.43
HORVU7Hr1G028070.1	Barley	cytosol	22.71	66.67
VIT_14s0066g01750.t01	Wine grape	plastid	55.52	54.66
TraesCS7A01G193000.1	Wheat	plastid	52.05	53.75
TraesCS7B01G098300.1	Wheat	plastid	51.42	53.44
TraesCS4B01G183600.1	Wheat	plastid	50.79	52.79
Solyc09g009290.2.1	Tomato	plastid	52.68	52.68
TraesCS7D01G194200.1	Wheat	plastid	51.42	52.58
EES04435	Sorghum	plastid	49.53	52.51
PGSC0003DMT400007012	Potato	plastid	53.0	52.5
Zm00001d053962_P002	Maize	plastid	49.21	52.17
HORVU7Hr1G039330.1	Barley	plastid	50.79	52.1
KRH20044	Soybean	plastid	52.37	50.3
KRG98009	Soybean	cytosol, plastid	47.95	45.92
GSMUA_Achr9P18260_001	Banana	plastid	48.58	44.64
CDY18585	Canola	plastid	30.28	22.54
CDX81417	Canola	plastid	30.28	22.17

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	UniProt:A0A078IUL2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlants:CDY53114	ProteinID:CDY53114	ProteinID:CDY53114.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00008616001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PIRSF:PIRSF000654
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0004EC0F21
SEG:seg	:	:	:	:	:

Description

BnaCnng24420DBnaCnng24420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUL2]

Coordinates

chrLK033165:-:33985..35757

Molecular Weight (calculated)

35866.7 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.564

Length

317 amino acids

Sequence
(BLAST)

001: MVSWVLSIRP QSCLLPEFPV SISKSKLLID CLPRSVPLRL SVPIKRQLTV KTRCFSETKR RTPSVQSKRQ FWEDPDDGSD SEDEEEGEDE EGIGNDLDFE
101: SDWEDGDSRA QKVTTDNNYE EQLAREVEQL LAPEERAILQ QNEKPNLQMI STKKWKPLQT LALSMQIQLM DNLMDNGLNI DDVDKDGETA LHKAVIGKKE
201: AVITHLLRKG ANPHVQDRDG ASALHYAVQV GALQTVKLLI KYNVDVNVTD NEGWTPLHIA VQSRNRDITK ILLTNGADKT RRTKDGKVAL DMALCFGRDF
301: KSYDLVKLLK IMPTDDI

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.