CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY44587
CDY44589
CDY53114

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	CDY44587	AT5G40160.1	17092312
AT5G66055.1	CDY44589	AT5G40160.1	17092312
AT5G66055.1	CDY53114	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18585	Canola	plastid	74.36	75.59
AT5G66055.1	Thale cress	plastid	69.52	69.2
KRH76586	Soybean	extracellular	18.71	60.9
KRH16661	Soybean	cytosol, vacuole	6.0	59.09
KRH76587	Soybean	plastid	51.96	50.91
KRH28866	Soybean	plastid	52.19	50.9
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	50.35	45.99
KRH28867	Soybean	plastid	43.88	45.13
GSMUA_Achr4P29610_001	Banana	plastid	43.19	44.52
PGSC0003DMT400022381	Potato	plastid	46.42	44.47
Solyc02g061820.2.1	Tomato	plastid	46.19	44.15
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	12.24	42.06
Zm00001d027544_P001	Maize	plastid	41.34	41.53
Os03t0135600-01	Rice	plastid	42.26	41.5
OQU93284	Sorghum	plastid	41.34	41.15
TraesCS4D01G328600.1	Wheat	plastid	40.88	38.99
TraesCS4B01G331800.1	Wheat	plastid	41.57	38.46
TraesCS5A01G503200.2	Wheat	plastid	41.34	38.0
HORVU4Hr1G080940.1	Barley	plastid	41.8	37.63
CDY53114	Canola	cytosol, plastid	22.17	30.28
CDY44587	Canola	plastid	21.94	29.87

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX81417
ProteinID:CDX81417	ProteinID:CDX81417.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00134999001
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PFAM:PF13637	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0004EEDB20	SEG:seg

Description

BnaC09g08280D

Coordinates

chrLK031824:+:1597160..1599114

Molecular Weight (calculated)

48507.3 Da

IEP (calculated)

9.346

GRAVY (calculated)

-0.407

Length

433 amino acids

Sequence
(BLAST)

001: MQLATTISLL LPSPSRLSPS LQSLTIPRRS SSVSYSSQTS ILPDAADDFT VGDCLVYEDG VFEDPYLEEE VSLEAVKERK IPKRRGRGKR IVQAAAAAEI
101: EPENLVPDEW RDVQAEVNLT KKDKRKIAQE LEFGVSVEKK RQGLIPLRKV DLKEYLTYKE AKLDQLKPVV LDKPTTFDGE GGERGEETYS SERVAPKNPR
201: WAVYGKGFEQ VTKFFNSDKY DPSGKKLDGP RKLLSKEEKF MLNSRNPHLA VATSKKWLPL HTLAASGEFY LVDSLLKHNL DINATDVGGL TALHRAIIGK
301: KQAITNYLLR ESANPFVLDD EGATLMHYAV QTASAPTIKL LLLYNADINA QDRDGWTPLH VAVQARRSDI VKLLLIKGAD IQVKNKASSI TFPLDGLTPL
401: GLCLYLGRET RTYEVLKMLK EFPRSRLKRL VTD

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.