CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68463
CDX81417
CDY18585
CDY19576
CDY27538
CDY37312
CDY50073
CDY60454
CDY70544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	CDY19576	AT3G21175.1	21798944
AT5G40160.1	CDY27538	AT3G21175.1	21798944
AT5G40160.1	CDY37312	AT3G21175.1	21798944
AT5G40160.1	CDY50073	AT3G21175.1	21798944
AT5G40160.1	CDX68463	AT3G48550.1	21798944
AT5G40160.1	CDY60454	AT3G48550.1	21798944
AT5G40160.1	CDY70544	AT3G48550.1	21798944
AT5G40160.1	CDX81417	AT5G66055.1	17092312
AT5G40160.1	CDY18585	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53114	Canola	cytosol, plastid	93.08	93.38
Bra025602.1-P	Field mustard	plastid	81.13	80.37
AT5G40160.1	Thale cress	plastid	76.42	77.14
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	28.3	71.43
HORVU7Hr1G028070.1	Barley	cytosol	22.96	67.59
TraesCS7A01G193000.1	Wheat	plastid	52.52	54.4
VIT_14s0066g01750.t01	Wine grape	plastid	55.03	54.35
Solyc09g009290.2.1	Tomato	plastid	54.09	54.26
TraesCS7B01G098300.1	Wheat	plastid	51.57	53.77
PGSC0003DMT400007012	Potato	plastid	54.09	53.75
TraesCS4B01G183600.1	Wheat	plastid	50.94	53.11
HORVU7Hr1G039330.1	Barley	plastid	51.57	53.07
TraesCS7D01G194200.1	Wheat	plastid	51.57	52.9
Zm00001d053962_P002	Maize	plastid	49.06	52.17
EES04435	Sorghum	plastid	49.06	52.17
KRH20044	Soybean	plastid	52.52	50.61
GSMUA_Achr9P18260_001	Banana	plastid	50.63	46.67
KRG98009	Soybean	cytosol, plastid	48.43	46.53
CDY18585	Canola	plastid	29.56	22.07
CDX81417	Canola	plastid	29.87	21.94

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	UniProt:A0A078I3I2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlants:CDY44587	ProteinID:CDY44587	ProteinID:CDY44587.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00080510001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PIRSF:PIRSF000654
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0004EDB990
SEG:seg	:	:	:	:	:

Description

BnaA04g10030DBnaA04g10030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3I2]

Coordinates

chrLK032595:+:135302..137018

Molecular Weight (calculated)

35965.8 Da

IEP (calculated)

5.053

GRAVY (calculated)

-0.551

Length

318 amino acids

Sequence
(BLAST)

001: MVSWVLSIRP QSCLLTNFPV SISKSKLLID CLPRSVPLRL SVPIKRQSAV KTRCFSETKR RTPSVQSKRE FWEDPDDGSD SEHEEEGEDE EDSIGNDLDF
101: ESDWEEGDSR AQKVTTDNNY EEQLAREVEQ LLAPEERAIL QQNEIPNLQM ISTKKWKPLQ TLALSMQIQL MDNLMENGLD IDDVDKDGQT ALHKAVIGKK
201: EAVISHLLRK GANPHVQDRD GASALHYAVQ VGALQTVKLL IKYNVDVNVT DNQGWTPLHI AVQSRNRDIT KILLTNGADK TRRTKDGKVA LDMALCFGRD
301: FKSYDLVKLL KIMPTDDI

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.