Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G080940.1 | |
| HORVU6Hr1G021570.1 | |
| HORVU7Hr1G097840.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40160.1 | HORVU6Hr1G021570.1 | AT3G21175.1 | 21798944 |
| AT5G40160.1 | HORVU7Hr1G097840.6 | AT3G21175.1 | 21798944 |
| AT5G40160.1 | HORVU4Hr1G080940.1 | AT5G66055.1 | 17092312 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G098300.1 | Wheat | plastid | 87.96 | 31.15 |
| TraesCS4B01G183600.1 | Wheat | plastid | 87.96 | 31.15 |
| CDY44589 | Canola | cytosol, endoplasmic reticulum, vacuole | 36.11 | 30.95 |
| TraesCS7A01G193000.1 | Wheat | plastid | 87.96 | 30.94 |
| TraesCS7D01G194200.1 | Wheat | plastid | 87.04 | 30.32 |
| HORVU7Hr1G039330.1 | Barley | plastid | 86.11 | 30.1 |
| Zm00001d053962_P002 | Maize | plastid | 78.7 | 28.43 |
| EES04435 | Sorghum | plastid | 78.7 | 28.43 |
| VIT_14s0066g01750.t01 | Wine grape | plastid | 71.3 | 23.91 |
| PGSC0003DMT400007012 | Potato | plastid | 69.44 | 23.44 |
| Solyc09g009290.2.1 | Tomato | plastid | 67.59 | 23.03 |
| CDY44587 | Canola | plastid | 67.59 | 22.96 |
| Bra025602.1-P | Field mustard | plastid | 67.59 | 22.74 |
| CDY53114 | Canola | cytosol, plastid | 66.67 | 22.71 |
| AT5G40160.1 | Thale cress | plastid | 65.74 | 22.54 |
| GSMUA_Achr9P18260_001 | Banana | plastid | 71.3 | 22.32 |
| KRG98009 | Soybean | cytosol, plastid | 67.59 | 22.05 |
| KRH20044 | Soybean | plastid | 66.67 | 21.82 |
| HORVU4Hr1G080940.1 | Barley | plastid | 45.37 | 10.19 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G028070.1 | EnsemblPlantsGene:HORVU7Hr1G028070 | Gene3D:1.25.40.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 |
| PANTHER:PTHR45194 | PFAM:PF12796 | PFscan:PS50088 | PFscan:PS50297 | SMART:SM00248 | SUPFAM:SSF48403 |
| UniParc:UPI000B46F5A4 | UniProt:A0A287VUK3 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:50177527..50178703
Molecular Weight (calculated)
11882.4 Da
IEP (calculated)
7.726
GRAVY (calculated)
-0.154
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: LSPKWHPLHT YAPALQIPFM DKLLDNGVDI DLVDKDGFTP LHKAITGKKE AVISHLLRKG SNPDVTDRDG ATPLHYAVQV GALKSVKLLI KYRVDVNVAD
101: VDIDSCRA
101: VDIDSCRA
001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKVLMAKICV EKN
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKVLMAKICV EKN
Arabidopsis Description
EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.