Factsheet for Zm00001d053962_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003978_P001
Zm00001d014656_P003
Zm00001d016564_P001
Zm00001d027544_P001
Zm00001d036494_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	Zm00001d014656_P003	AT3G21175.1	21798944
AT5G40160.1	Zm00001d036494_P001	AT3G21175.1	21798944
AT5G40160.1	Zm00001d003978_P001	AT3G48550.1	21798944
AT5G40160.1	Zm00001d016564_P001	AT3G48550.1	21798944
AT5G40160.1	Zm00001d027544_P001	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04435	Sorghum	plastid	92.98	92.98
HORVU7Hr1G028070.1	Barley	cytosol	28.43	78.7
TraesCS7A01G193000.1	Wheat	plastid	69.9	68.08
TraesCS7D01G194200.1	Wheat	plastid	69.57	67.1
TraesCS7B01G098300.1	Wheat	plastid	67.89	66.56
TraesCS4B01G183600.1	Wheat	plastid	67.56	66.23
HORVU7Hr1G039330.1	Barley	plastid	67.56	65.37
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	25.08	59.52
VIT_14s0066g01750.t01	Wine grape	plastid	53.51	49.69
CDY53114	Canola	cytosol, plastid	52.17	49.21
PGSC0003DMT400007012	Potato	plastid	52.51	49.06
CDY44587	Canola	plastid	52.17	49.06
Bra025602.1-P	Field mustard	plastid	52.51	48.91
Solyc09g009290.2.1	Tomato	plastid	51.51	48.58
AT5G40160.1	Thale cress	plastid	50.84	48.25
GSMUA_Achr9P18260_001	Banana	plastid	55.18	47.83
KRG98009	Soybean	cytosol, plastid	50.84	45.92
KRH20044	Soybean	plastid	49.5	44.85
Zm00001d044792_P001	Maize	mitochondrion	9.7	36.25
Zm00001d027544_P001	Maize	plastid	33.44	23.2

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100191181	MapMan:35.1	ProteinID:AQK60862.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	UniProt:B4F7X1	EMBL:BT033209	EMBL:EU961930	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PRINTS:PR01415
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI00017B5FB9
EnsemblPlantsGene:Zm00001d053962	EnsemblPlants:Zm00001d053962_P002	EnsemblPlants:Zm00001d053962_T002	SEG:seg	:	:

Description

Ankyrin repeat domain-containing protein EMB506 chloroplastic

Coordinates

chr4:+:244374978..244377262

Molecular Weight (calculated)

32707.0 Da

IEP (calculated)

8.114

GRAVY (calculated)

-0.398

Length

299 amino acids

Sequence
(BLAST)

001: MLVWAATASP PSTPSAVPFA PPHRAAAPRP PPPLCRSLPG LLCAGLIPPP RAAASDGDVF WEEPDDGSGS DYEDDGPEQR RALRFPSSSP SYRLEASAQQ
101: EQDLRREIEL LLTPEEKATL DQHETPDVTR ISSPKWHPLH SYALALQIPL MDKLLNSGVD INLVDRDGFT SLHKAVIGKK EAVISHLLRK GANPHVRDRD
201: GATPLHYAVQ AGALQTVKLL IKYKVDVNVA DNDGWTPLHL AIQSRNRDIA KVLLVNGADK TRRTKDGRTA LDLSLCFGRD FKSYDLAKLV KLIPANRGA

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.