Factsheet for Bra025602.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018049.1-P
Bra023900.1-P
Bra029904.1-P
Bra031258.1-P
Bra037188.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	Bra023900.1-P	AT3G21175.1	21798944
AT5G40160.1	Bra031258.1-P	AT3G21175.1	21798944
AT5G40160.1	Bra018049.1-P	AT3G48550.1	21798944
AT5G40160.1	Bra029904.1-P	AT3G48550.1	21798944
AT5G40160.1	Bra037188.1-P	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44587	Canola	plastid	80.37	81.13
CDY53114	Canola	cytosol, plastid	79.75	80.76
AT5G40160.1	Thale cress	plastid	71.65	73.02
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	28.04	71.43
HORVU7Hr1G028070.1	Barley	cytosol	22.74	67.59
VIT_14s0066g01750.t01	Wine grape	plastid	55.45	55.28
TraesCS7B01G098300.1	Wheat	plastid	50.78	53.44
HORVU7Hr1G039330.1	Barley	plastid	51.4	53.4
TraesCS7A01G193000.1	Wheat	plastid	50.78	53.09
TraesCS4B01G183600.1	Wheat	plastid	50.16	52.79
Zm00001d053962_P002	Maize	plastid	48.91	52.51
EES04435	Sorghum	plastid	48.91	52.51
PGSC0003DMT400007012	Potato	plastid	51.4	51.56
Solyc09g009290.2.1	Tomato	plastid	50.78	51.42
TraesCS7D01G194200.1	Wheat	plastid	49.53	51.29
KRH20044	Soybean	plastid	52.34	50.91
KRG98009	Soybean	cytosol, plastid	48.91	47.43
GSMUA_Achr9P18260_001	Banana	plastid	47.98	44.64
Bra037188.1-P	Field mustard	mitochondrion	25.23	41.97

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:Bra025602
EnsemblPlants:Bra025602.1	EnsemblPlants:Bra025602.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	UniProt:M4E9Z5	PFAM:PF12796	PIRSF:PIRSF000654	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0002544D18	SEG:seg

Description

AT5G40160 (E=2e-127) EMB506 | EMB506 (embryo defective 506); protein binding

Coordinates

chrA04:-:7542964..7544475

Molecular Weight (calculated)

36262.0 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.562

Length

321 amino acids

Sequence
(BLAST)

001: MVSWVLSIRP QSCLLTKFPV SDSAISKSKL LIDCLPRSVP LRLSVPIKRQ SSVKTRCFSE TKRRTPSVQS KREFWEDPDD GSDSEDEEEG EDEEDSIGND
101: LDFESDWEEG DSRAQKVTTD NNYEEQLARE IEQLLAPEER AILQQNEIPN LQMISTKKWK PLQTLALSMQ IQLMDNLMDN GLDIDDVDKD GQTALHKAVI
201: GKKEAVISHL LRKGANPHIQ DRDGASALHY AVQVGALQTV KLLIKYNVDV NVTDNEGWTP LHIAVQSRNR DITKILLTNG ADKTRRTKDG KVALDMALCF
301: GRDFKSYDLV KLLKIMPTDD I

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.