CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03966
KRH16661
KRH28866
KRH28867
KRH44616
KRH57236
KRH76586
KRH76587

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	KRH44616	AT3G21175.1	21798944
AT5G40160.1	KRH03966	AT3G48550.1	21798944
AT5G40160.1	KRH57236	AT3G48550.1	21798944
AT5G40160.1	KRH16661	AT5G66055.1	17092312
AT5G40160.1	KRH28866	AT5G66055.1	17092312
AT5G40160.1	KRH28867	AT5G66055.1	17092312
AT5G40160.1	KRH76586	AT5G66055.1	17092312
AT5G40160.1	KRH76587	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20044	Soybean	plastid	72.21	72.42
HORVU7Hr1G028070.1	Barley	cytosol	22.05	67.59
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	22.36	58.73
VIT_14s0066g01750.t01	Wine grape	plastid	55.29	56.83
TraesCS7B01G098300.1	Wheat	plastid	47.43	51.48
TraesCS7A01G193000.1	Wheat	plastid	47.73	51.47
PGSC0003DMT400007012	Potato	plastid	49.24	50.94
Zm00001d053962_P002	Maize	plastid	45.92	50.84
EES04435	Sorghum	plastid	45.62	50.5
TraesCS4B01G183600.1	Wheat	plastid	46.53	50.49
HORVU7Hr1G039330.1	Barley	plastid	47.13	50.49
Solyc09g009290.2.1	Tomato	plastid	48.04	50.16
TraesCS7D01G194200.1	Wheat	plastid	46.83	50.0
AT5G40160.1	Thale cress	plastid	47.43	49.84
Bra025602.1-P	Field mustard	plastid	47.43	48.91
CDY44587	Canola	plastid	46.53	48.43
CDY53114	Canola	cytosol, plastid	45.92	47.95
GSMUA_Achr9P18260_001	Banana	plastid	48.64	46.67
KRH76586	Soybean	extracellular	17.22	42.86
KRH16661	Soybean	cytosol, vacuole	5.14	38.64
KRH28867	Soybean	plastid	31.12	24.47
KRH28866	Soybean	plastid	31.72	23.65
KRH76587	Soybean	plastid	31.12	23.3

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100818556	MapMan:35.1	EMBL:ACUP02010833	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_18G044300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	UniProt:K7MPW5	EnsemblPlants:KRG98009	ProteinID:KRG98009	ProteinID:KRG98009.1
PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403
UniParc:UPI000233E70C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:3821104..3823557

Molecular Weight (calculated)

36816.6 Da

IEP (calculated)

4.963

GRAVY (calculated)

-0.424

Length

331 amino acids

Sequence
(BLAST)

001: MGSWATSSVL ANQFIPWSTT NSESAIDSKL GVVFYKMYRN TNKRQLSLAF AWDNCKVRSI GAIKSYKDVS YFQNELVGTW EEPDTGSDSE GDDEEYEEVE
101: NENFGFESGS GEEGMKTSVV TDVNITSGDN YEELIKKEIE QLLEPGERAI LKQNVTPNLE KISTAKWSPL HTLVLSMQMS CVDKLLENGV DIDLPDKEGL
201: TALHKAIIGK KEAVISHLLR RGASPHVMDK DGATPLHYAV QVGAKMTVKL LIKYKVDVNV EDNEGWTPLH VAIQSRNRDI AKILLVNGAD KTRKNKDGKT
301: ALDLSLCYGK DFKSYDLAKL LKTVPADSDL F

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.