CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 6
nucleus 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98009
KRH20044

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	KRG98009	AT5G40160.1	17092312
AT5G66055.1	KRH20044	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76586	Soybean	extracellular	23.99	75.94
KRH16661	Soybean	cytosol, vacuole	7.6	72.73
Bra037188.1-P	Field mustard	mitochondrion	28.5	62.18
KRH76587	Soybean	plastid	52.26	49.77
KRH28866	Soybean	plastid	51.78	49.1
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	51.07	45.36
GSMUA_Achr4P29610_001	Banana	plastid	44.89	45.0
CDY18585	Canola	plastid	44.42	43.9
CDX81417	Canola	plastid	45.13	43.88
AT5G66055.1	Thale cress	plastid	43.94	42.53
PGSC0003DMT400022381	Potato	plastid	45.61	42.48
Solyc02g061820.2.1	Tomato	plastid	45.61	42.38
Zm00001d027544_P001	Maize	plastid	40.62	39.68
OQU93284	Sorghum	plastid	40.86	39.54
Os03t0135600-01	Rice	plastid	40.62	38.78
TraesCS4D01G328600.1	Wheat	plastid	40.62	37.67
TraesCS4B01G331800.1	Wheat	plastid	40.14	36.11
TraesCS5A01G503200.2	Wheat	plastid	40.14	35.88
HORVU4Hr1G080940.1	Barley	plastid	39.91	34.93
KRG98009	Soybean	cytosol, plastid	24.47	31.12
KRH20044	Soybean	plastid	24.23	30.91

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	EMBL:ACUP02006767	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:GLYMA_11G081900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LI64	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH28867	ProteinID:KRH28867	ProteinID:KRH28867.1	PFAM:PF12796
PFAM:PF13637	PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248
SUPFAM:SSF48403	UniParc:UPI0002952157	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:6148664..6152301

Molecular Weight (calculated)

47835.8 Da

IEP (calculated)

10.471

GRAVY (calculated)

-0.515

Length

421 amino acids

Sequence
(BLAST)

001: MEATTMFRFF SAVMVNPKPH KLFSSLSIFP SATAPRHFQS LKFPTKQNAH SENRDIGDRV VFDDGIFESG AVFQNDSNLT TNTPKRRPSP RTKVTRITRE
101: NLVPDKWREV QSETKITINE RRKKKKNIRG LVPLRDANKI EVEKKLSRYK DVNWDEYKSS KKAKLRQISP LVLKNPSTFP VKENLPEPHF NGERVEPKNP
201: RGVLHGKGLE DVIQFFNSGS YNPSYNTSLE GRRKLFAITK EEVLLLNKRM PDLAIATSGK WLPLHTLAAG GELYLLDSLL KHNVDINAVD KDGLTALHKA
301: IGKKRVITNY LLKNSANPFV RDKEGATLMH YAVQTASIET IELLLLYNVD INLQDNDGWT PLHLAVQTQR PNLVRLLLLK GADKTLRNKD GLTPLDFCLY
401: SGQSFQTYVL IKLLKQPQGS L

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.