CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98009
KRH20044

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	KRG98009	AT5G40160.1	17092312
AT5G66055.1	KRH20044	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76587	Soybean	plastid	90.77	91.18
Bra037188.1-P	Field mustard	mitochondrion	28.83	66.32
KRH76586	Soybean	extracellular	19.37	64.66
KRH16661	Soybean	cytosol, vacuole	5.86	59.09
CDY18585	Canola	plastid	53.38	55.63
AT5G66055.1	Thale cress	plastid	52.48	53.56
CDX81417	Canola	plastid	50.9	52.19
KRH28867	Soybean	plastid	49.1	51.78
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	55.18	51.69
PGSC0003DMT400022381	Potato	plastid	51.8	50.88
Solyc02g061820.2.1	Tomato	plastid	51.13	50.11
GSMUA_Achr4P29610_001	Banana	plastid	44.37	46.9
OQU93284	Sorghum	plastid	45.27	46.21
Os03t0135600-01	Rice	plastid	45.5	45.8
Zm00001d027544_P001	Maize	plastid	44.37	45.71
TraesCS4D01G328600.1	Wheat	plastid	44.14	43.17
TraesCS4B01G331800.1	Wheat	plastid	43.92	41.67
TraesCS5A01G503200.2	Wheat	plastid	43.92	41.4
HORVU4Hr1G080940.1	Barley	plastid	44.37	40.96
KRG98009	Soybean	cytosol, plastid	23.65	31.72
KRH20044	Soybean	plastid	22.52	30.3

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100815562	MapMan:35.1	EMBL:ACUP02006767	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_11G081800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LI63
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH28866	ProteinID:KRH28866	ProteinID:KRH28866.1
PFAM:PF12796	PFAM:PF13637	PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194
SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI000233D436	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:6143925..6147082

Molecular Weight (calculated)

50571.4 Da

IEP (calculated)

7.430

GRAVY (calculated)

-0.510

Length

444 amino acids

Sequence
(BLAST)

001: MFHVSTIALN PQPHNFLFPL PVSTSRNLPL SQTLHFPRNW NLRSLSPSLH LTYDDSDDHV IGDCVVFEDG VFDEPVFHNH HLNSDNLAVD KPKPKPGRSW
101: RKKVEETLGE NLVPDKWREV QAEINITKRE MRKIAREVEF NSKVEKKRRG LIPLRDMNLD DYKAYKEAKL AQMKLLDYAS CSPVGQNVPE AEPEFNRGGE
201: EVAEAEPELN AGERVEPKNP RWAVYGRGLE DVTEFFNSDN YDPTAKTLGG RRKLFNKEEK VLLNKRIPDL AAATSDKWLP LHTLAACGEF YLLDSLLKHN
301: VDINAVDRDG LTALHRAIIG KKQAITNYLL RNSANPFVQD NEGATLMHYA VLTASTQTVK ILLLYNVDIN LPDNYGWTPL HLAVQAQRTD LVRLLLIKGA
401: DKTLKNEDGL TPLDLCLYNG QCARTYELIK LFKQPQRRLR HVSV

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.