Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0066g01750.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66055.1 | VIT_14s0066g01750.t01 | AT5G40160.1 | 17092312 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76586 | Soybean | extracellular | 19.2 | 68.42 |
| Bra037188.1-P | Field mustard | mitochondrion | 27.85 | 68.39 |
| KRH16661 | Soybean | cytosol, vacuole | 5.91 | 63.64 |
| PGSC0003DMT400022381 | Potato | plastid | 53.59 | 56.19 |
| KRH76587 | Soybean | plastid | 52.32 | 56.11 |
| Solyc02g061820.2.1 | Tomato | plastid | 52.95 | 55.41 |
| KRH28866 | Soybean | plastid | 51.69 | 55.18 |
| CDY18585 | Canola | plastid | 49.16 | 54.69 |
| AT5G66055.1 | Thale cress | plastid | 48.95 | 53.33 |
| GSMUA_Achr4P29610_001 | Banana | plastid | 47.05 | 53.1 |
| KRH28867 | Soybean | plastid | 45.36 | 51.07 |
| CDX81417 | Canola | plastid | 45.99 | 50.35 |
| OQU93284 | Sorghum | plastid | 43.88 | 47.82 |
| Zm00001d027544_P001 | Maize | plastid | 42.83 | 47.1 |
| Os03t0135600-01 | Rice | plastid | 42.83 | 46.03 |
| TraesCS4D01G328600.1 | Wheat | plastid | 43.46 | 45.37 |
| TraesCS4B01G331800.1 | Wheat | plastid | 44.09 | 44.66 |
| HORVU4Hr1G080940.1 | Barley | plastid | 45.15 | 44.49 |
| TraesCS5A01G503200.2 | Wheat | plastid | 43.88 | 44.16 |
| VIT_14s0066g01750.t01 | Wine grape | plastid | 22.78 | 33.54 |
Protein Annotations
| Gene3D:1.25.40.20 | EntrezGene:100241946 | wikigene:100241946 | MapMan:35.1 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom |
| InterPro:Ankyrin_rpt-contain_sf | ProteinID:CCB49223 | ProteinID:CCB49223.1 | UniProt:F6HAH9 | EMBL:FN595505 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 | EntrezGene:LOC100241946 |
| wikigene:LOC100241946 | PFAM:PF12796 | PFAM:PF13637 | PIRSF:PIRSF000654 | PFscan:PS50088 | PFscan:PS50297 |
| PANTHER:PTHR45194 | SMART:SM00248 | SUPFAM:SSF48403 | TIGR:TC58988 | UniParc:UPI0002107EF0 | ArrayExpress:VIT_00s0264g00130 |
| EnsemblPlantsGene:VIT_00s0264g00130 | EnsemblPlants:VIT_00s0264g00130.t01 | unigene:Vvi.18277 | RefSeq:XP_002270437 | RefSeq:XP_002270437.2 | SEG:seg |
Description
No Description!
Coordinates
chrUn:+:19086352..19091953
Molecular Weight (calculated)
53217.4 Da
IEP (calculated)
7.732
GRAVY (calculated)
-0.544
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKTKPKKTV VEARSDIGGP TFLFHSQSSQ EGGVAMLPQT LLNPQNPKIF SLLSSSPLPL HTPRRLYSFQ TLTFFRKSSS LALASPSSSF QPPYQQEEDL
101: VEEEEVPIGD CLVFEEGVFE DPYLQDNFDF NAQNPKHNKP NLEIEPENLV PEKWKEVQEQ INITKKERRK IAQQLEYGSR VEKRKQGLVP ISQEDYSSYR
201: ETKLAQLKPL VLDKPTSFPV KEEAAEAAPV EGNPNEPTSS RVVPRNPRRA VYGGTLEDIS EFFNSGTYQP GGNAATQGPR KLFTKEEKLL LNKRIPDLAA
301: ATSGKWLPLH TLAASGEFYL MDALLKHNVD INAVDKDGLT ALHKAIIGKK QAITNYLLRE SANPYVRDKE GATLMHYAVQ TASSHAIKIL LLYNVDINLQ
401: DNDGWTPLHL AVQTRRTDLV RLLLIKGADR TLKNQDGLSP LELCLYSGQD TRTYELIKLL KQLPQQRSPS PYIA
101: VEEEEVPIGD CLVFEEGVFE DPYLQDNFDF NAQNPKHNKP NLEIEPENLV PEKWKEVQEQ INITKKERRK IAQQLEYGSR VEKRKQGLVP ISQEDYSSYR
201: ETKLAQLKPL VLDKPTSFPV KEEAAEAAPV EGNPNEPTSS RVVPRNPRRA VYGGTLEDIS EFFNSGTYQP GGNAATQGPR KLFTKEEKLL LNKRIPDLAA
301: ATSGKWLPLH TLAASGEFYL MDALLKHNVD INAVDKDGLT ALHKAIIGKK QAITNYLLRE SANPYVRDKE GATLMHYAVQ TASSHAIKIL LLYNVDINLQ
401: DNDGWTPLHL AVQTRRTDLV RLLLIKGADR TLKNQDGLSP LELCLYSGQD TRTYELIKLL KQLPQQRSPS PYIA
001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE
Arabidopsis Description
AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.