Factsheet for PGSC0003DMT400022381

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007012

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	PGSC0003DMT400007012	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g061820.2.1	Tomato	plastid	95.35	95.14
Bra037188.1-P	Field mustard	mitochondrion	26.99	63.21
KRH76586	Soybean	extracellular	18.36	62.41
KRH16661	Soybean	cytosol, vacuole	5.97	61.36
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	56.19	53.59
KRH76587	Soybean	plastid	50.88	52.04
KRH28866	Soybean	plastid	50.88	51.8
GSMUA_Achr4P29610_001	Banana	plastid	46.24	49.76
CDY18585	Canola	plastid	46.02	48.83
AT5G66055.1	Thale cress	plastid	45.58	47.36
CDX81417	Canola	plastid	44.47	46.42
KRH28867	Soybean	plastid	42.48	45.61
OQU93284	Sorghum	plastid	43.81	45.52
Zm00001d027544_P001	Maize	plastid	42.7	44.78
Os03t0135600-01	Rice	plastid	42.92	43.99
TraesCS4D01G328600.1	Wheat	plastid	42.7	42.51
TraesCS5A01G503200.2	Wheat	plastid	43.36	41.61
TraesCS4B01G331800.1	Wheat	plastid	42.92	41.45
HORVU4Hr1G080940.1	Barley	plastid	43.81	41.16
PGSC0003DMT400007012	Potato	plastid	23.01	32.5

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102592797	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	UniProt:M1AGM2	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400008679	PGSC:PGSC0003DMG400008679	EnsemblPlants:PGSC0003DMT400022381
PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403
UniParc:UPI0002949F99	RefSeq:XP_006367165.1	SEG:seg	:	:	:

Description

Aberrant large forked product [Source:PGSC_GENE;Acc:PGSC0003DMG400008679]

Coordinates

chr2:-:19599774..19604727

Molecular Weight (calculated)

51691.1 Da

IEP (calculated)

9.585

GRAVY (calculated)

-0.603

Length

452 amino acids

Sequence
(BLAST)

001: MSPTAILNPR IPNFTPFPLY KLQFLNLPPS FPKNTFRSQI PPHSLNFSLQ NNSQQPHFPL EDEEHVIGDC IVFEEGIFDD PFVQKSDNNQ NKPQNNNKKK
101: SAEIQSENLI PEEWVEVQRE INITKKERRK LSQQLEFGQR AERRRLELMP IGSNSNARGS SIEDYLKARE EKLKQLKPLV LENPDFLKVK RDKNEKKKKK
201: SDAELSESEE ENSVLRVSSE RVLPRDPRSA VYGGGLEDIK EFFNSGIYEA NAAKSPEGPR KLFTTEEKFL LNKRHPDLVP ATSEKWQPLH TLAASGEFYL
301: LTSLLKHVVD INVPDKDGLT AIHKAILGKK QAIFNFLLRE SANPLIRDKD GATLMHYAVR TASTHMIKIL LLYNVDINLQ DHDGWTPLHL AVQSRRTDIV
401: RLLLIKGADK TLKNRDGLTP LDICLHSGRD IRTYELIKLL KQLPKVPIVG LT

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.