Factsheet for GSMUA_Achr4P29610_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P18260_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	GSMUA_Achr9P18260_001	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76586	Soybean	extracellular	19.76	62.41
Bra037188.1-P	Field mustard	mitochondrion	28.57	62.18
KRH16661	Soybean	cytosol, vacuole	6.43	61.36
Os03t0135600-01	Rice	plastid	55.71	53.06
Zm00001d027544_P001	Maize	plastid	54.29	52.9
OQU93284	Sorghum	plastid	54.05	52.18
TraesCS4D01G328600.1	Wheat	plastid	52.38	48.46
TraesCS4B01G331800.1	Wheat	plastid	53.1	47.65
TraesCS5A01G503200.2	Wheat	plastid	53.33	47.56
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	53.1	47.05
PGSC0003DMT400022381	Potato	plastid	49.76	46.24
Solyc02g061820.2.1	Tomato	plastid	49.76	46.14
HORVU4Hr1G080940.1	Barley	plastid	52.62	45.95
KRH76587	Soybean	plastid	48.33	45.93
KRH28867	Soybean	plastid	45.0	44.89
KRH28866	Soybean	plastid	46.9	44.37
CDX81417	Canola	plastid	44.52	43.19
CDY18585	Canola	plastid	43.57	42.96
AT5G66055.1	Thale cress	plastid	44.29	42.76
GSMUA_Achr9P18260_001	Banana	plastid	26.43	32.17

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	EnsemblPlantsGene:GSMUA_Achr4G29610_001	EnsemblPlants:GSMUA_Achr4P29610_001	EnsemblPlants:GSMUA_Achr4T29610_001	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	UniProt:M0ST73	PFAM:PF12796	PIRSF:PIRSF000654	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0002965EF5	SEG:seg

Description

Putative Ankyrin repeat domain-containing protein, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G29610_001]

Coordinates

chr4:+:27499549..27506299

Molecular Weight (calculated)

46741.9 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.445

Length

420 amino acids

Sequence
(BLAST)

001: MPPLCSHLLS LNISLPFVAS PSRYPRSSCH SPPITLPFCS PFPALKPFPP AAAASSFPYS YQNPDRDQQR DPQLLVPQDE ELVIGDCLVF EDGAFEDGDP
101: FDPPSPSEEA GRPGRRRPAA AASTAETESL VPNNRMERRK KPPVPDMEEY RTYREMKLAQ LKPVVLDDPR EFPQAAVPPE QKGLPGGRVA PRNPRLGLDG
201: GTLEDIREFF NSGKYVPRDV DDDKNPQGRR KLFTLEEKVL LNKRIPNLAE ATSSKWLPLH SLAASGEFFL LDTLLKHNVD INGVDKDGLS AIHKAILCKK
301: QAVINYLLRN SANPFIRDKD GATLMHYAVQ TASSQTIKIL LLYSVDINLA DDDGWTPLHL AVQTQRTDIV RLLLIKGADK TIRNHDGLTP LDLCLYSGHN
401: SRTYELIKLL KQFPLSKTSA

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.