CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98009
KRH20044

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	KRG98009	AT5G40160.1	17092312
AT5G66055.1	KRH20044	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28866	Soybean	plastid	91.18	90.77
Bra037188.1-P	Field mustard	mitochondrion	28.73	65.8
KRH76586	Soybean	extracellular	19.46	64.66
KRH16661	Soybean	cytosol, vacuole	6.33	63.64
CDY18585	Canola	plastid	53.62	55.63
AT5G66055.1	Thale cress	plastid	52.49	53.33
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	56.11	52.32
KRH28867	Soybean	plastid	49.77	52.26
CDX81417	Canola	plastid	50.91	51.96
PGSC0003DMT400022381	Potato	plastid	52.04	50.88
Solyc02g061820.2.1	Tomato	plastid	51.36	50.11
GSMUA_Achr4P29610_001	Banana	plastid	45.93	48.33
OQU93284	Sorghum	plastid	45.93	46.67
Os03t0135600-01	Rice	plastid	46.15	46.26
Zm00001d027544_P001	Maize	plastid	45.02	46.17
TraesCS4D01G328600.1	Wheat	plastid	44.34	43.17
TraesCS4B01G331800.1	Wheat	plastid	44.12	41.67
TraesCS5A01G503200.2	Wheat	plastid	44.12	41.4
HORVU4Hr1G080940.1	Barley	plastid	44.57	40.96
KRG98009	Soybean	cytosol, plastid	23.3	31.12
KRH20044	Soybean	plastid	22.85	30.61

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	EMBL:ACUP02000626	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:GLYMA_01G161900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	UniProt:K7K461	EnsemblPlants:KRH76587	ProteinID:KRH76587	ProteinID:KRH76587.1	PFAM:PF12796
PFAM:PF13637	PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248
SUPFAM:SSF48403	UniParc:UPI0002337B0C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:50000654..50003984

Molecular Weight (calculated)

50611.4 Da

IEP (calculated)

7.799

GRAVY (calculated)

-0.572

Length

442 amino acids

Sequence
(BLAST)

001: MFHVSTVALN PQPHTFLFPL PFFTSRNLQL SQTLQFPRNW NLRSISPSLH PTPQYDDSED HVIGDCVVFE DGVFDEPLFH NHHHNPDNLT VDKPKPKPRP
101: SWRKKVEETL GENLVPDKWR EVQAEINITK REMRKIAREV EFNSKVEKKR RGLIPLRDMN LDDYKAYKEA KLAQMKLLDY SSSFPVDENV PEPQLNRGEK
201: FEAEAELDGG ERVAPKNPRW AVYGRGLEDV TEFFNSDNYD PTAKTPGGRR KLFNKEEKVL LNKRIPDLAA ATSDKWLPLH TLAACGEFHL LDSLLKHNVD
301: INAVDKDGLT ALHRATIGKK QAIINYLLRN SANPFVQDNE GATLMHYAVL TASTQTIKIL LLYNVDINLQ DNYGWTPLHL AVQAQRTDLV RLLLIKGADK
401: TLKNEDGLTP LDLCLYNGQS ARTYELIKLF KQPQRRLSHV SV

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.