Factsheet for TraesCS4D01G328600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4B01G183600.1
TraesCS7A01G193000.1
TraesCS7B01G098300.1
TraesCS7D01G194200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66055.1	TraesCS4B01G183600.1	AT5G40160.1	17092312
AT5G66055.1	TraesCS7A01G193000.1	AT5G40160.1	17092312
AT5G66055.1	TraesCS7B01G098300.1	AT5G40160.1	17092312
AT5G66055.1	TraesCS7D01G194200.1	AT5G40160.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G331800.1	Wheat	plastid	93.83	91.03
TraesCS5A01G503200.2	Wheat	plastid	94.27	90.87
HORVU4Hr1G080940.1	Barley	plastid	91.63	86.49
Os03t0135600-01	Rice	plastid	68.5	70.52
OQU93284	Sorghum	plastid	64.1	66.9
Zm00001d027544_P001	Maize	plastid	63.22	66.59
Bra037188.1-P	Field mustard	mitochondrion	25.55	60.1
KRH76586	Soybean	extracellular	16.74	57.14
KRH16661	Soybean	cytosol, vacuole	5.29	54.55
GSMUA_Achr4P29610_001	Banana	plastid	48.46	52.38
KRH76587	Soybean	plastid	43.17	44.34
KRH28866	Soybean	plastid	43.17	44.14
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	45.37	43.46
PGSC0003DMT400022381	Potato	plastid	42.51	42.7
Solyc02g061820.2.1	Tomato	plastid	42.07	42.16
AT5G66055.1	Thale cress	plastid	39.43	41.15
CDX81417	Canola	plastid	38.99	40.88
KRH28867	Soybean	plastid	37.67	40.62
CDY18585	Canola	plastid	38.11	40.61
TraesCS7D01G194200.1	Wheat	plastid	23.13	33.87

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796
PIRSF:PIRSF000654	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403
EnsemblPlantsGene:TraesCS4D01G328600	EnsemblPlants:TraesCS4D01G328600.1	TIGR:cd00204	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:487098386..487102378

Molecular Weight (calculated)

50607.2 Da

IEP (calculated)

7.697

GRAVY (calculated)

-0.515

Length

454 amino acids

Sequence
(BLAST)

001: MPPPSLPLLL PFSSPFLHPL PTSASRLRRS LSLSLSPCPR PLASPSPSFA VAAVNDDDYD YDDDVVLGDC LVFEDEAFEA PDLDIGRPSP RPSRAARGGG
101: SLVPERWKDA VEEINLTKKE KRRIAHGLRF GSRLDRRVPS AVAAPDEYRA YREGRLDAEL GHGARDYLVS PLESKSRAYS EVRLDTEPGR AVRDHVEPLE
201: EKPRAPEKVE APPPPPPGTR AAPRNPRTAM DSVGLEDIAE LFNSSQYVPG ETEDGNSARS RRKLFTDEEK VLLNRRLPDL EGAASSKWLP LHTLAASGDF
301: YLLDNLLKHK VDVNALDKDG LPAIHKAIIS KKHAIINYLL RNSANPSVYD RDGATLMHYA VQTACNQTIK TLLLYNVNIN RPDDYGWTPL HLAVQTQRTD
401: IVRLLLLKGA DRTLKNQDGL TPLDLCLRLG HDVRTYELIK LLKNFRISKQ HNSF

Best Arabidopsis Sequence Match ( AT5G66055.1 )
(BLAST)

001: MQSLSTPHTI SLLLPRTSPS RLSPSLHSLA FPTRLRSLSY SSQTSILPDA GDDFIVGDCL VYEDGVFEDP YLDKEVTQVA KQERKKNRRG GAKRLDESEI
101: EPENLVPEEW RDIQAEVNLT KKDKRKIAQE MEFGVRVEKK RQGLIPLRKV DLNDFLTYKE AKLAQLRPVI LDKPGNFSDD SGASSDGETA VSSPSERVAP
201: KNPRWAVYGK GFDHVAKFFN SDKYDPSDKK SDGPRKLLSK EEKFMLNSRN PDLAVATSKK WLPLHTLAAC GEFYLVDSLL KHNLDINATD VGGLTVLHRA
301: IIGKKQAITN YLLRESANPF VLDDEGATLM HYAVQTASAP TIKLLLLYNA DINAQDRDGW TPLHVAVQAR RSDIVKLLLI KGADIEVKNK DGLTPLGLCL
401: YLGREIRTYE VMKLLKEFPL SRHKKRLVTT DEDIE

Arabidopsis Description

AKRPAT5G66055 protein [Source:UniProtKB/TrEMBL;Acc:B9DF91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.