Factsheet for GSMUA_Achr9P18260_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P04520_001
GSMUA_Achr3P05620_001
GSMUA_Achr4P29610_001
GSMUA_Achr6P06410_001
GSMUA_Achr6P20920_001
GSMUA_Achr9P13870_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT5G40160.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT5G40160.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT5G40160.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944
AT5G40160.1	GSMUA_Achr6P06410_001	AT3G48550.1	21798944
AT5G40160.1	GSMUA_Achr6P20920_001	AT3G48550.1	21798944
AT5G40160.1	GSMUA_Achr4P29610_001	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G028070.1	Barley	cytosol	22.32	71.3
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	22.03	60.32
Zm00001d053962_P002	Maize	plastid	47.83	55.18
EES04435	Sorghum	plastid	46.96	54.18
TraesCS7B01G098300.1	Wheat	plastid	47.54	53.77
PGSC0003DMT400007012	Potato	plastid	49.86	53.75
TraesCS4B01G183600.1	Wheat	plastid	47.25	53.44
Solyc09g009290.2.1	Tomato	plastid	48.99	53.31
VIT_14s0066g01750.t01	Wine grape	plastid	48.99	52.48
HORVU7Hr1G039330.1	Barley	plastid	46.96	52.43
TraesCS7A01G193000.1	Wheat	plastid	46.38	52.12
TraesCS7D01G194200.1	Wheat	plastid	45.8	50.97
CDY44587	Canola	plastid	46.67	50.63
KRH20044	Soybean	plastid	48.41	50.61
AT5G40160.1	Thale cress	plastid	46.09	50.48
KRG98009	Soybean	cytosol, plastid	46.67	48.64
CDY53114	Canola	cytosol, plastid	44.64	48.58
Bra025602.1-P	Field mustard	plastid	44.64	47.98
GSMUA_Achr4P29610_001	Banana	plastid	32.17	26.43

Protein Annotations

EnsemblPlants:GSMUA_Achr9P18260_001	EnsemblPlants:GSMUA_Achr9T18260_001	EnsemblPlantsGene:GSMUA_Achr9G18260_001	Gene3D:1.25.40.20	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	PANTHER:PTHR45194	PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	SEG:seg
SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0002953F9D	UniProt:M0U1D3	MapMan:35.1	:

Description

Aberrant large forked product, putative [Source:GMGC_GENE;Acc:GSMUA_Achr9G18260_001]

Coordinates

chr9:+:12801489..12805578

Molecular Weight (calculated)

38164.3 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.252

Length

345 amino acids

Sequence
(BLAST)

001: MVAGAGLSSS SFHLLHLRPS SAFRSLNPLL PPKPPLIPSS SSRAAVRAHS FAGNFEWHGS AARAKRGSDG FWEDPDDGYD SELEEVDQEL EDEEGEEVSG
101: DQGDATISTV SQYDDLDIFQ LLLDVIKFLC YVDSTICLFS NYKFVCIDSL AEVDLILEPE EKVFLQRNEV PDLSKISTMK WNPFHSLALS GQIPFMDKLL
201: EDGSTDIDCL DKDGFTALHK AIIGKKEAVI SHLLRRGANP QVKDPDGATP LHYAVQVGAM QTVKLLIKYK VDVNVADNDG WTPLHVAIQT RSRDIAKVLL
301: VNGADKTRRN KDGKTPLDLS LCFGKDFKSY ELAKLLKLVP ANRNF

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.