Factsheet for VIT_14s0066g01750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0264g00130.t01
VIT_09s0054g00440.t01
VIT_17s0000g01360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	VIT_09s0054g00440.t01	AT3G21175.1	21798944
AT5G40160.1	VIT_17s0000g01360.t01	AT3G48550.1	21798944
AT5G40160.1	VIT_00s0264g00130.t01	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G028070.1	Barley	cytosol	23.91	71.3
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	22.36	57.14
Solyc09g009290.2.1	Tomato	plastid	55.59	56.47
PGSC0003DMT400007012	Potato	plastid	55.9	56.25
KRH20044	Soybean	plastid	57.14	55.76
CDY53114	Canola	cytosol, plastid	54.66	55.52
Bra025602.1-P	Field mustard	plastid	55.28	55.45
KRG98009	Soybean	cytosol, plastid	56.83	55.29
AT5G40160.1	Thale cress	plastid	54.04	55.24
CDY44587	Canola	plastid	54.35	55.03
TraesCS7A01G193000.1	Wheat	plastid	51.86	54.4
EES04435	Sorghum	plastid	50.0	53.85
TraesCS7B01G098300.1	Wheat	plastid	50.93	53.77
TraesCS7D01G194200.1	Wheat	plastid	51.55	53.55
Zm00001d053962_P002	Maize	plastid	49.69	53.51
TraesCS4B01G183600.1	Wheat	plastid	50.31	53.11
HORVU7Hr1G039330.1	Barley	plastid	50.62	52.75
GSMUA_Achr9P18260_001	Banana	plastid	52.48	48.99
VIT_00s0264g00130.t01	Wine grape	cytosol, plastid	33.54	22.78

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100247466	wikigene:100247466	MapMan:35.1	UniProt:A5ACZ8	EMBL:AM423493
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN75542	ProteinID:CAN75542.1	ProteinID:CCB58540
ProteinID:CCB58540.1	EMBL:FN596252	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100247466	wikigene:LOC100247466	PFAM:PF12796	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI000151E4CE	ArrayExpress:VIT_14s0066g01750
EnsemblPlantsGene:VIT_14s0066g01750	EnsemblPlants:VIT_14s0066g01750.t01	unigene:Vvi.22971	RefSeq:XP_002275234	RefSeq:XP_002275234.1	RefSeq:XP_010660955.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:28079322..28083413

Molecular Weight (calculated)

35917.6 Da

IEP (calculated)

6.426

GRAVY (calculated)

-0.440

Length

322 amino acids

Sequence
(BLAST)

001: MVSCATVPSP LSRCFPFSVV ATTAAAPTKL FTEFSTPRRN HFCFPHVVEC LKVRICAVDR NRVSSLQPRT RAWEDPDDGS GSEYDDEDEE MEEYDLDFES
101: DWEEEKDASA TVTGVNKSTA RKYEADLVKE VVQLLGPEER QILQQNAAPN LEKISTAKWS PLHTLALSGQ IHSMDKLLAN GLDIDNVDKD GLTALHRAII
201: GKKEAVISHL LRKGANPHVR DRDGATPLHY AVQVGAMQTV KLLIKYNVDI NAADNEGWTP LHIAIQSRNR IIAKRLLVNG ADKTRRNQDG KTPLDLSLCY
301: GKDFKSYELA KLLKLVPANR DL

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.