Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G028070.1 | Barley | cytosol | 30.95 | 36.11 |
| CDY53114 | Canola | cytosol, plastid | 71.43 | 28.39 |
| CDY44587 | Canola | plastid | 71.43 | 28.3 |
| Bra025602.1-P | Field mustard | plastid | 71.43 | 28.04 |
| AT5G40160.1 | Thale cress | plastid | 67.46 | 26.98 |
| TraesCS7B01G098300.1 | Wheat | plastid | 62.7 | 25.9 |
| TraesCS7A01G193000.1 | Wheat | plastid | 62.7 | 25.73 |
| TraesCS4B01G183600.1 | Wheat | plastid | 61.9 | 25.57 |
| TraesCS7D01G194200.1 | Wheat | plastid | 62.7 | 25.48 |
| HORVU7Hr1G039330.1 | Barley | plastid | 61.9 | 25.24 |
| Zm00001d053962_P002 | Maize | plastid | 59.52 | 25.08 |
| EES04435 | Sorghum | plastid | 59.52 | 25.08 |
| PGSC0003DMT400007012 | Potato | plastid | 57.14 | 22.5 |
| KRH20044 | Soybean | plastid | 58.73 | 22.42 |
| VIT_14s0066g01750.t01 | Wine grape | plastid | 57.14 | 22.36 |
| KRG98009 | Soybean | cytosol, plastid | 58.73 | 22.36 |
| Solyc09g009290.2.1 | Tomato | plastid | 55.56 | 22.08 |
| GSMUA_Achr9P18260_001 | Banana | plastid | 60.32 | 22.03 |
| CDY18585 | Canola | plastid | 42.06 | 12.44 |
| CDX81417 | Canola | plastid | 42.06 | 12.24 |
Protein Annotations
| EnsemblPlants:CDY44589 | EnsemblPlantsGene:GSBRNA2T00080512001 | Gene3D:1.25.40.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 |
| PANTHER:PTHR45194 | PFAM:PF12796 | PFscan:PS50088 | PFscan:PS50297 | ProteinID:CDY44589 | ProteinID:CDY44589.1 |
| SMART:SM00248 | SUPFAM:SSF48403 | UniParc:UPI0004EE70FB | UniProt:A0A078I539 | MapMan:35.1 | : |
Description
BnaA04g10010DBnaA04g10010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I539]
Coordinates
chrLK032595:+:139605..140461
Molecular Weight (calculated)
14074.3 Da
IEP (calculated)
10.532
GRAVY (calculated)
0.019
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWNHVSTCA IKNGSSQQNL LAITTFPLFC LIFPFRKKFL LIDGASALHY AVQVGALQTV KLLIKYNVDV NVTDNARWTP LHIAVQNRNR DITKILLTNG
101: ADKTRRTKDG KVALDMALCF GRDLKS
101: ADKTRRTKDG KVALDMALCF GRDLKS
001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI
Arabidopsis Description
EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.