Factsheet for PGSC0003DMT400007012

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022381
PGSC0003DMT400046599

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	PGSC0003DMT400046599	AT3G48550.1	21798944
AT5G40160.1	PGSC0003DMT400022381	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g009290.2.1	Tomato	plastid	92.19	93.06
HORVU7Hr1G028070.1	Barley	cytosol	23.44	69.44
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	22.5	57.14
VIT_14s0066g01750.t01	Wine grape	plastid	56.25	55.9
CDY44587	Canola	plastid	53.75	54.09
AT5G40160.1	Thale cress	plastid	52.81	53.65
TraesCS7A01G193000.1	Wheat	plastid	51.25	53.42
CDY53114	Canola	cytosol, plastid	52.5	53.0
Zm00001d053962_P002	Maize	plastid	49.06	52.51
HORVU7Hr1G039330.1	Barley	plastid	50.62	52.43
EES04435	Sorghum	plastid	48.75	52.17
TraesCS7B01G098300.1	Wheat	plastid	49.69	52.13
KRH20044	Soybean	plastid	53.44	51.82
TraesCS4B01G183600.1	Wheat	plastid	49.38	51.8
Bra025602.1-P	Field mustard	plastid	51.56	51.4
TraesCS7D01G194200.1	Wheat	plastid	49.38	50.97
GSMUA_Achr9P18260_001	Banana	plastid	53.75	49.86
KRG98009	Soybean	cytosol, plastid	50.94	49.24
PGSC0003DMT400022381	Potato	plastid	32.5	23.01

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
UniProt:M0ZSA8	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400002708	PGSC:PGSC0003DMG400002708	EnsemblPlants:PGSC0003DMT400007012	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI000295CF8A	SEG:seg

Description

Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400002708]

Coordinates

chr9:-:3573687..3578971

Molecular Weight (calculated)

36536.8 Da

IEP (calculated)

4.536

GRAVY (calculated)

-0.588

Length

320 amino acids

Sequence
(BLAST)

001: MVLQCNSSSP FTQLWPTTVT ATAYTCSFSC SNVVSFRFPR RINMGFHSFQ EISRRNSLVN LRKATFWEDP DDGSDSEEEE ESEMEEEEEE EEEEEDMDVE
101: SSFEYEVNKA MDNSTNGLST REDEFVKEVE QLLSPEEREI LYRNQTLELD KISTEKWNPL HTFALAGQIR FMDRLLEEGL DIDAVDKEGQ TALHHAVFGK
201: KEAVISHLLR KGANPQVRDT DGVTPLHYAV QVGALQTVKL LIKYKVDVNV ADNVGWTPLH VAMQSRNRDI AKVLLVNGAD KYRKNKDGKT PLDISLCYGK
301: DFKSYDLAKL LKLVPANREL

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.