CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88899
EES05120
EES12026
OQU93284

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40160.1	EER88899	AT3G21175.1	21798944
AT5G40160.1	EES05120	AT3G48550.1	21798944
AT5G40160.1	EES12026	AT3G48550.1	21798944
AT5G40160.1	OQU93284	AT5G66055.1	17092312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053962_P002	Maize	plastid	92.98	92.98
HORVU7Hr1G028070.1	Barley	cytosol	28.43	78.7
TraesCS7A01G193000.1	Wheat	plastid	71.24	69.38
TraesCS7D01G194200.1	Wheat	plastid	70.9	68.39
TraesCS7B01G098300.1	Wheat	plastid	69.23	67.87
TraesCS4B01G183600.1	Wheat	plastid	68.9	67.54
HORVU7Hr1G039330.1	Barley	plastid	68.9	66.67
CDY44589	Canola	cytosol, endoplasmic reticulum, vacuole	25.08	59.52
VIT_14s0066g01750.t01	Wine grape	plastid	53.85	50.0
CDY53114	Canola	cytosol, plastid	52.51	49.53
CDY44587	Canola	plastid	52.17	49.06
Bra025602.1-P	Field mustard	plastid	52.51	48.91
PGSC0003DMT400007012	Potato	plastid	52.17	48.75
Solyc09g009290.2.1	Tomato	plastid	51.17	48.27
AT5G40160.1	Thale cress	plastid	50.5	47.94
GSMUA_Achr9P18260_001	Banana	plastid	54.18	46.96
KRG98009	Soybean	cytosol, plastid	50.5	45.62
KRH20044	Soybean	plastid	49.83	45.15
OQU93284	Sorghum	plastid	33.11	22.76

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	EntrezGene:8055077	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
UniProt:C5XTR0	EnsemblPlants:EES04435	ProteinID:EES04435	ProteinID:EES04435.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PIRSF:PIRSF000654
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45194	SMART:SM00248	EnsemblPlantsGene:SORBI_3004G026000	SUPFAM:SSF48403
unigene:Sbi.2040	UniParc:UPI0001A8530E	RefSeq:XP_002451459.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:2074389..2077485

Molecular Weight (calculated)

32890.4 Da

IEP (calculated)

8.620

GRAVY (calculated)

-0.399

Length

299 amino acids

Sequence
(BLAST)

001: MLPWAATASP PSTPAAVSFA PPLRAAAPRP PPPLCRPLPR MLCAGLNPPP RAASSDGNVF WEEPDDGSGS DYEDDGPEQR RALRFPSSSP SSRLEAARQQ
101: EQDLRREIEL LLTPEEKAIL DQHETPDVTK ISSPKWHPLH SYALALQIPL MDKLLDSGVD INLLDRDGFT CLHKAVIGKK EAVISHLLRK GANPHVRDRD
201: GATPLHYAVQ AGALQTVKLL IKYKVDVNVA DNDGWTPLHL AIQSRNRDIV KVLLVNGVDK TRRTKDGRTA LDLSLCFGRD FKSYDLAKLV KLIPANRGV

Best Arabidopsis Sequence Match ( AT5G40160.1 )
(BLAST)

001: MVSSVLSIPP QTCLLPRLPI SDSVNCKSKI VYCLSTSVRG SSVKRQSTAR TRSFTETNRR TPSVQSKHEF WEDPDDGSDS ENEYEGEEED GIGNDLDNES
101: DWEDDSRVQK LTTTDNYEEE LAKEVEQLLE PEERVILQQN EKPNLKMIST KSWKPLQTLA LSMQIQLMDN LIENGLDIDD VDKDNQTALH KAIIGKKEAV
201: ISHLLRKGAN PHLQDRDGAA PIHYAVQVGA LQTVKLLFKY NVDVNVADNE GWTPLHIAVQ SRNRDITKIL LTNGADKTRR TKDGKLALDL ALCFGRDFKS
301: YDLVKLLKIM PTGDI

Arabidopsis Description

EMB506Ankyrin repeat domain-containing protein EMB506, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.