Factsheet for VIT_00s0174g00120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0127g00520.t01
VIT_01s0127g00530.t01
VIT_01s0127g00540.t01
VIT_01s0127g00560.t01
VIT_01s0127g00590.t01
VIT_01s0127g00600.t01
VIT_14s0066g01750.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07500.1	VIT_01s0127g00520.t01	AT1G60420.1	21798944
AT3G07500.1	VIT_01s0127g00530.t01	AT1G60420.1	21798944
AT3G07500.1	VIT_01s0127g00540.t01	AT1G60420.1	21798944
AT3G07500.1	VIT_01s0127g00560.t01	AT1G60420.1	21798944
AT3G07500.1	VIT_01s0127g00590.t01	AT1G60420.1	21798944
AT3G07500.1	VIT_01s0127g00600.t01	AT1G60420.1	21798944
AT3G07500.1	VIT_14s0066g01750.t01	AT5G40160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0269g00010.t01	Wine grape	nucleus	61.45	96.23
CDY28044	Canola	cytosol	54.22	67.5
CDY35937	Canola	nucleus	53.01	62.26
AT3G07500.1	Thale cress	nucleus	54.22	62.21
Solyc09g057870.2.1	Tomato	cytosol	32.93	48.52
VIT_05s0102g00390.t01	Wine grape	nucleus	36.55	44.39
VIT_00s0174g00130.t01	Wine grape	cytosol	34.94	42.44
VIT_05s0102g00470.t01	Wine grape	cytosol	32.13	40.61
VIT_00s0269g00040.t01	Wine grape	cytosol, extracellular, nucleus	28.11	40.46
VIT_00s0174g00090.t01	Wine grape	cytosol	28.51	38.59
VIT_05s0102g00690.t01	Wine grape	cytosol	36.95	34.46
VIT_05s0102g00400.t01	Wine grape	nucleus	13.65	13.77
VIT_05s0102g00410.t01	Wine grape	cytosol	10.04	12.95
VIT_05s0102g00440.t01	Wine grape	cytosol	12.45	12.6
VIT_00s0174g00140.t01	Wine grape	cytosol	11.65	11.51
VIT_18s0001g06550.t01	Wine grape	cytosol	8.43	8.79
VIT_18s0001g06680.t01	Wine grape	cytosol	8.84	6.23
VIT_18s0117g00140.t01	Wine grape	nucleus	11.24	4.49
VIT_18s0117g00390.t01	Wine grape	nucleus	10.44	3.8

Protein Annotations

EntrezGene:100243024	wikigene:100243024	EntrezGene:100852511	wikigene:100852511	MapMan:15.5.46	EMBL:AM458786
ProteinID:CAN81120	ProteinID:CAN81120.1	ProteinID:CCB59124	ProteinID:CCB59124.1	ProteinID:CCB60936	ProteinID:CCB60936.1
ncoils:Coil	UniProt:F6I1W9	InterPro:FAR1_DNA_bnd_dom	InterPro:FHY3/FAR1	EMBL:FN596280	EMBL:FN596519
GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0010018
GO:GO:0042753	GO:GO:0045893	EntrezGene:LOC100243024	wikigene:LOC100243024	EntrezGene:LOC100852511	wikigene:LOC100852511
PFAM:PF03101	PANTHER:PTHR31669	PANTHER:PTHR31669:SF46	UniParc:UPI000210862E	ArrayExpress:VIT_00s0174g00120	EnsemblPlantsGene:VIT_00s0174g00120
EnsemblPlants:VIT_00s0174g00120.t01	RefSeq:XP_003634985	RefSeq:XP_003634985.1	:	:	:

Description

No Description!

Coordinates

chrUn:-:6900842..6908810

Molecular Weight (calculated)

29005.7 Da

IEP (calculated)

8.138

GRAVY (calculated)

-0.724

Length

249 amino acids

Sequence
(BLAST)

001: MVALNLMHTI DFLEFGSFNS SRFWDLDLSN QMDEHLSDGE DGEMIESSNG KELVAHEGNS EMEPHVGMEF ESEEAAKVFY DTYATHLGFI MRVDAFRRSM
101: RDGKVVWRRL VCNKEGFRKL RPRRSENRKP RAITREGCKA MIVVKKEKTG KWVVTRFVKE HNHQLVATPA NSRRTVLLSQ TPDEKDIKIR ELTAELQRER
201: KRCAAFQEQL DMVLRDMEEH SNHLSRNIDG IVQSVREIES KKIVHSQSK

Best Arabidopsis Sequence Match ( AT3G07500.1 )
(BLAST)

001: MEGNSLPEED VEMMENSDVM KTVTDEASPM VEPFIGMEFE SEEAAKSFYD NYATCMGFVM RVDAFRRSMR DGTVVWRRLV CNKEGFRRSR PRRSESRKPR
101: AITREGCKAL IVVKREKSGT WLVTKFEKEH NHPLLPLSPN VRRNFQLPQT PDEKDAKIRE LSAELSRERR RCTALQQQLD MVLKEMEEHS NHLTININSV
201: IQSVRDIESN TFTKQQT

Arabidopsis Description

Far-red impaired responsive (FAR1) family protein [Source:UniProtKB/TrEMBL;Acc:Q84JA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.