Factsheet for VIT_01s0127g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0127g00560.t01	Wine grape	cytosol	68.5	71.85
VIT_01s0127g00520.t01	Wine grape	cytosol	67.17	70.7
VIT_01s0127g00590.t01	Wine grape	cytosol	66.17	69.28
VIT_01s0127g00540.t01	Wine grape	mitochondrion	17.67	67.95
KRH45656	Soybean	cytosol, nucleus	63.0	66.32
PGSC0003DMT400079611	Potato	cytosol	62.33	64.82
CDY60573	Canola	cytosol	59.17	61.42
Bra031513.1-P	Field mustard	cytosol	59.0	61.25
CDY24527	Canola	cytosol	58.83	61.07
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	58.67	60.9
Solyc05g005460.2.1	Tomato	cytosol	58.5	60.41
GSMUA_Achr3P10290_001	Banana	cytosol	59.17	60.07
TraesCS2B01G489600.3	Wheat	cytosol	52.0	55.91
Os03t0405500-01	Rice	plasma membrane	52.5	55.36
HORVU2Hr1G103310.2	Barley	cytosol	53.0	55.11
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	52.83	54.94
Zm00001d029457_P001	Maize	extracellular	51.5	54.31
TraesCS2A01G466800.1	Wheat	cytosol	47.17	54.01
EER94707	Sorghum	cytosol	52.5	53.94
Os03t0405900-01	Rice	cytosol, plastid	52.17	53.87
Zm00001d029459_P001	Maize	cytosol	46.67	48.28
OQU92417	Sorghum	cytosol	45.83	46.93
VIT_18s0001g01030.t01	Wine grape	cytosol	29.33	41.41
VIT_04s0008g02900.t01	Wine grape	cytosol	26.33	39.6
VIT_01s0127g00530.t01	Wine grape	cytosol	28.33	21.07

Protein Annotations

MapMan:10.6.3	EntrezGene:100854054	wikigene:100854054	Gene3D:3.40.30.10	EMBL:AM462825	ProteinID:CAN59927
ProteinID:CAN59927.1	ProteinID:CCB51782	ProteinID:CCB51782.1	ncoils:Coil	InterPro:DC1	UniProt:F6HHU5
EMBL:FN595761	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
GO:GO:0098869	InterPro:IPR013766	EntrezGene:LOC100854054	wikigene:LOC100854054	PFAM:PF03107	PFAM:PF13905
PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00021084AB	ArrayExpress:VIT_01s0127g00600	EnsemblPlantsGene:VIT_01s0127g00600	EnsemblPlants:VIT_01s0127g00600.t01
unigene:Vvi.8390	RefSeq:XP_003631272	RefSeq:XP_003631272.1	:	:	:

Description

No Description!

Coordinates

chr1:-:7950090..7959014

Molecular Weight (calculated)

67658.9 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.345

Length

600 amino acids

Sequence
(BLAST)

001: MDCEDGSAVH DVVSVLSSPN RDYLIRNNGN QVKITSLRGK KIGLYFSASW CGPCRRFTPE LVEVYNGLSL KGDFEITFVS ADEDDEMFKE YFSEMPWLAI
101: PFSDSDTRDH LDELFRVSGI PHLVIIGENG KVLTDSGVEI IREYGVEGFP FTSERIKELK EQEEVAKREQ SLRSILVSDS RDFVISANGM KVPISKLEGR
201: LVGLYFSLSS YKLCVDFTSK LVDVYAKVKA MGESFEIVLI SFDDDEESFN EGFGSMPCFA LPFKDESCRK LARYFELSTV PTLVMIGPDG KTLHSNVVEA
301: IEEYGIQAYP FTPAKFAELE EIEKAKQEAQ TLESILVSGN RDYLIGKHGV KVPVSDLVGK NILLYFSAHW CSPCRAFLPK LTDAYHKIKA KDSGFEVIFI
401: SSDRDQTSFD DFFSEMPWLA LPFGDERKES LSKMFKVQGI PKVVAIGPTG RTITTQARDL VADHGADAYP FTDERLQEIE AQYEMAKGWP DKLSHALHEE
501: HELALTQHQI YKCDGCDEEG HAWAFSCEEC DFDLHPKCAL EDGKGTEDDA MDEEKPEEGW ICDGKGAWSQ KSKMVSWNHN PIVKRLEAWL KLQDSGTLTR

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.