CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0127g00560.t01	Wine grape	cytosol	69.3	69.06
VIT_01s0127g00590.t01	Wine grape	cytosol	66.67	66.32
VIT_01s0127g00520.t01	Wine grape	cytosol	65.79	65.79
VIT_01s0127g00540.t01	Wine grape	mitochondrion	17.89	65.38
PGSC0003DMT400079611	Potato	cytosol	65.96	65.16
Bra031513.1-P	Field mustard	cytosol	64.74	63.84
CDY24527	Canola	cytosol	64.56	63.67
CDY60573	Canola	cytosol	64.21	63.32
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	64.21	63.32
VIT_01s0127g00600.t01	Wine grape	cytosol	66.32	63.0
Solyc05g005460.2.1	Tomato	cytosol	62.98	61.79
GSMUA_Achr3P10290_001	Banana	cytosol	62.98	60.74
Os03t0405500-01	Rice	plasma membrane	57.19	57.29
TraesCS2B01G489600.3	Wheat	cytosol	55.79	56.99
Zm00001d029457_P001	Maize	extracellular	55.96	56.06
Os03t0405900-01	Rice	cytosol, plastid	56.67	55.59
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	56.14	55.46
HORVU2Hr1G103310.2	Barley	cytosol	55.61	54.94
TraesCS2A01G466800.1	Wheat	cytosol	50.18	54.58
EER94707	Sorghum	cytosol	55.79	54.45
OQU92417	Sorghum	cytosol	52.11	50.68
Zm00001d029459_P001	Maize	cytosol	50.88	50.0
KRH60996	Soybean	cytosol	29.82	40.19
KRH51662	Soybean	cytosol	29.47	38.71
KRH52617	Soybean	cytosol	25.61	37.53
KRH61954	Soybean	cytosol	25.09	36.76
VIT_01s0127g00530.t01	Wine grape	cytosol	28.07	19.83

Protein Annotations

MapMan:10.6.3	EntrezGene:100809224	Gene3D:3.40.30.10	EMBL:ACUP02005275	InterPro:DC1	EnsemblPlantsGene:GLYMA_08G285900
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	GO:GO:0098869
UniProt:I1KXE7	InterPro:IPR013766	EnsemblPlants:KRH45656	ProteinID:KRH45656	ProteinID:KRH45656.1	PFAM:PF03107
PFAM:PF13905	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	SUPFAM:SSF52833
SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00023386F2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:39563061..39566326

Molecular Weight (calculated)

64215.8 Da

IEP (calculated)

4.598

GRAVY (calculated)

-0.345

Length

570 amino acids

Sequence
(BLAST)

001: MADSADVTHD VVSLLSSPQR DFLLRNNGDQ VKIDSLKGKK LGLYFSASWC GPCQTFTPTL VDVYNEVAKK GDFQIVFITA DEDDESFNGY FSKMPWLAIP
101: FSDSDTRSRL DELFHVRGIP HLALLDEAGN VVTEDGVDVI REYGVEGYPF TSARIQELRD QEEEARRNQS VRSLLVSPSR DFVISSDGKK TLVSELEGKT
201: VGLYFCVKSF GSCSDFTPKL VEVYEKLKAQ GENFEVVLIP LDDDEESFKE LLESVPWLSL PFKDKICGKL ARYFELSTLP TLVIIGPDGK TLHSNVAEAI
301: EDHGVAAYPF TPEKFAELDE ILKAKEAAQT LESILVSDDQ DFVIGKDGVK IPVSELKGKV VLLYFSAHWC PPCRAFLPKL IDAYNKIKEK GNALEVVFIS
401: SDRDQTSFDE FFAGMPWLAL PFGDSRKKFL SRKFRVSGIP MLVAIASSGQ TLTTKARDLV SLYGADAYPF TEERIKEIET EQEETAKGWP EKLKHELHEH
501: ELVLTRRRVY YCDACNEEGH IWSYYCGDCD FDLHPKCALE KEDKEGSKDD AKEEKSKDEW VCDGEVCKKA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.