Factsheet for Os03t0405900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0405500-01	Rice	plasma membrane	82.44	84.18
HORVU2Hr1G103310.2	Barley	cytosol	76.42	76.95
TraesCS2B01G489600.3	Wheat	cytosol	73.49	76.52
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	75.9	76.43
Zm00001d029457_P001	Maize	extracellular	74.53	76.1
EER94707	Sorghum	cytosol	76.42	76.03
TraesCS2A01G466800.1	Wheat	cytosol	68.5	75.95
Zm00001d029459_P001	Maize	cytosol	66.09	66.21
OQU92417	Sorghum	cytosol	62.31	61.77
VIT_01s0127g00560.t01	Wine grape	cytosol	57.31	58.22
KRH45656	Soybean	cytosol, nucleus	55.59	56.67
VIT_01s0127g00540.t01	Wine grape	mitochondrion	15.15	56.41
Bra031513.1-P	Field mustard	cytosol	54.91	55.19
CDY60573	Canola	cytosol	54.73	55.02
GSMUA_Achr3P10290_001	Banana	cytosol	55.94	54.99
CDY24527	Canola	cytosol	54.56	54.84
PGSC0003DMT400079611	Potato	cytosol	54.22	54.59
VIT_01s0127g00520.t01	Wine grape	cytosol	53.18	54.21
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	53.87	54.15
VIT_01s0127g00590.t01	Wine grape	cytosol	52.5	53.23
VIT_01s0127g00600.t01	Wine grape	cytosol	53.87	52.17
Solyc05g005460.2.1	Tomato	cytosol	51.64	51.64
Os01t0794400-01	Rice	cytosol, extracellular	26.68	39.34
Os04t0608600-01	Rice	cytosol, peroxisome	12.05	35.18
VIT_01s0127g00530.t01	Wine grape	cytosol	23.06	16.6

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	EntrezGene:4333077	ProteinID:AAP50932.1	ProteinID:AAU89249.1	ProteinID:ABF96516.1
EMBL:AK243686	ProteinID:BAF12245.2	ProteinID:BAS84632.1	ncoils:Coil	InterPro:DC1	ProteinID:EEE59229.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004791	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016853	GO:GO:0019725	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	EnsemblPlantsGene:Os03g0405900	EnsemblPlants:Os03t0405900-01	PFAM:PF03107	PFAM:PF13905	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF57	UniProt:Q7Y0F2	SUPFAM:SSF52833	SUPFAM:SSF57889
InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00001A3B2F	RefSeq:XP_015630416.1
SEG:seg	:	:	:	:	:

Description

Hypothetical conserved gene. (Os03t0405900-01)

Coordinates

chr3:+:16628549..16632054

Molecular Weight (calculated)

64425.5 Da

IEP (calculated)

4.559

GRAVY (calculated)

-0.282

Length

581 amino acids

Sequence
(BLAST)

001: MADATHAAAD GGVATILASA DGRDFLLRNS ADKVKISSIK ASTVALYFSA SWCPPCRRFT PKLIEAYNEL VSQGKSFEVV FVSGDSDQDA FNAYFAKMPW
101: LAVPFSDSEA LAKLNERYKV MGIPHLVILD AKSGEIYTED GVELVHEYGT EAYPFTTERI NELKEQEKAA KDNQTIHSLF GTPTRDYLIT NKGDKVPISD
201: LEGKYVGLCF VVNGYGPVVQ FTSVLAKIYE KLKAVGEKFE VVMVSLDGDE ESFNESFADM PWLAIPQGDK MCEKLARYFE LSGLPMLVLI GPDGKTLNDD
301: IADIIDEHGP DAWEGFPFSA EKLEILAEKA KAKAESQTLE SLLVTGDLDF VLGKDGAKVP VSELVGKTVL LYFSAKWCPP CRAFLPKLVN EYNKIKEKHN
401: DFEIVFISSD REQSSYDEFF SGMPWLALPL GDERKQQLSK IFKITGIPSL VAIGPDGKTV TKDAKTPLVA HGADAFPFTE EKLQELEKEK EKKINDMAKG
501: WPEKLKHDLH DHELVLTRCT TYGCDGCDEM GDSWSYRCKE CDFDLHPKCA LEEKGDVEMG EENAEAAPAG YVCEGDVCRK V

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.