Factsheet for Os01t0794400-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 18986194

msms PMID: 18986194 doi

YH Jung, SH Jeong, SH Kim, R Singh, JE Lee, YS Cho, GK Agrawal, R Rakwal, NS Jwa

Department of Molecular Biology, Sejong University, Gunja-dong, Seoul 143-747, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01593	Sorghum	cytosol	80.71	80.51
TraesCS3D01G320500.1	Wheat	cytosol	80.2	80.2
TraesCS3B01G356500.1	Wheat	cytosol	79.7	80.1
TraesCS3A01G327100.1	Wheat	cytosol	79.19	79.59
Zm00001d012591_P001	Maize	cytosol	79.95	79.15
HORVU3Hr1G077930.16	Barley	endoplasmic reticulum	74.37	73.8
GSMUA_Achr9P11600_001	Banana	cytosol	58.38	57.5
VIT_18s0001g01030.t01	Wine grape	cytosol	49.49	45.88
Solyc04g081900.2.1	Tomato	cytosol	47.97	42.95
PGSC0003DMT400025576	Potato	cytosol	46.95	42.05
KRH60996	Soybean	cytosol	44.92	41.84
KRH51662	Soybean	cytosol	44.67	40.55
Os04t0608600-01	Rice	cytosol, peroxisome	14.97	29.65
Os03t0405500-01	Rice	plasma membrane	39.09	27.07
Os03t0405900-01	Rice	cytosol, plastid	39.34	26.68

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	EntrezGene:4324135	EMBL:AK122041	ProteinID:BAF06417.1	ProteinID:BAS74737.1
ProteinID:EEE55518.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766
EnsemblPlantsGene:Os01g0794400	EnsemblPlants:Os01t0794400-01	PFAM:PF13905	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF57
UniProt:Q0JIL1	SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0000DD8D7D	RefSeq:XP_015621161.1	:	:	:	:

Description

Thioredoxin domain 2 containing protein. (Os01t0794400-01)

Coordinates

chr1:+:33642080..33650929

Molecular Weight (calculated)

43777.9 Da

IEP (calculated)

4.775

GRAVY (calculated)

-0.297

Length

394 amino acids

Sequence
(BLAST)

001: MGREPEMEEA RENGGVGGSV LPLASLISPT GNEVQISELE GKIIGLYFAA NWYPKCEAFT PALTAAYHQL KEHGAGFEVI FVSCDENRPS FERFHRAMPW
101: PAVPFGDIGC KKRLSERFQV EGIPRLVVLA PNGEVVQPDA VELVHRYGDR AFPFTSARVA ELEADEQRKF ASQTLEKIFS VSGKDYVNGS QEQVPISSLV
201: GKTVGLYFSA HRCAPCIKFT AKLAAIYSNL KGKAEDFEII YIPMDKEEDG YLRSCSDMPW LALPYDDGAS SGALARYFDV REIPTLVVVG PDGKTVTREG
301: RNLVNLYFDM AFPFTDEQIR LLQEMEDEDA KGYPPSLRHT GHRHELSIVS DKSGGGPYIC CECDEQGLGW AYQCIACGYE IHLRCGRDME GRAE

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.