CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012591_P001	Maize	cytosol	93.42	92.71
Os01t0794400-01	Rice	cytosol, extracellular	80.51	80.71
TraesCS3B01G356500.1	Wheat	cytosol	77.22	77.81
TraesCS3D01G320500.1	Wheat	cytosol	76.46	76.65
TraesCS3A01G327100.1	Wheat	cytosol	75.7	76.28
HORVU3Hr1G077930.16	Barley	endoplasmic reticulum	70.89	70.53
GSMUA_Achr9P11600_001	Banana	cytosol	56.46	55.75
VIT_18s0001g01030.t01	Wine grape	cytosol	48.86	45.41
KRH60996	Soybean	cytosol	44.3	41.37
Solyc04g081900.2.1	Tomato	cytosol	45.06	40.45
PGSC0003DMT400025576	Potato	cytosol	43.8	39.32
KRH51662	Soybean	cytosol	42.78	38.94
EES12823	Sorghum	cytosol	32.41	32.9
OQU92417	Sorghum	cytosol	38.48	25.94
EER94707	Sorghum	cytosol	37.47	25.34

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	EntrezGene:8055234	UniProt:C5XME0	EnsemblPlants:EES01593	ProteinID:EES01593
ProteinID:EES01593.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
GO:GO:0098869	InterPro:IPR013766	PFAM:PF13905	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85
EnsemblPlantsGene:SORBI_3003G323500	SUPFAM:SSF52833	SUPFAM:SSF57889	unigene:Sbi.3754	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0001A8441F	RefSeq:XP_002456473.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:65000639..65004307

Molecular Weight (calculated)

43517.6 Da

IEP (calculated)

4.869

GRAVY (calculated)

-0.261

Length

395 amino acids

Sequence
(BLAST)

001: MAGDPGDAPE VGEGGIRSVL TMGSLVDPSG NEVQFPEIDG KMIGLYFAAN WYPKCEAFTP VLAAAYEQLK ERGAGFEVVL VSCDEDRPSF ERFHRTMPWP
101: AVPFGDLRCK KRLSERFQVE GIPRLVVLAA DGAVVHPDAA DLVHRYGERA FPFTAAKVAE LEADDQRKYA SQTLEKLFSI NGKEYVNGAN EQVPISSLVG
201: KTVGLYFSAN HCAPCIKFTT KLAAIYSSLK GKAEDFEIVY VPMDKEEDGY LRSCRDMPWL ALPYDGVPSR ALARYFDVRE IPTLVVVGPD GKTVTRDGRN
301: LVNLYFDMAF PFTDAQIRLL QEAEDEAAKE YPQSLRHRGH RHELSIVSDK SGGGPYICCE CEEQGLGWAY QCIACGYEIH LRCGQNAEGG GAGTA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.