CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94707	Sorghum	cytosol	65.87	66.1
Os03t0405500-01	Rice	plasma membrane	63.48	65.38
TraesCS2B01G489600.3	Wheat	cytosol	61.43	64.52
HORVU2Hr1G103310.2	Barley	cytosol	63.48	64.47
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	62.8	63.78
TraesCS2A01G466800.1	Wheat	cytosol	57.0	63.74
Os03t0405900-01	Rice	cytosol, plastid	61.77	62.31
KRH45656	Soybean	cytosol, nucleus	50.68	52.11
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	50.85	51.56
VIT_01s0127g00560.t01	Wine grape	cytosol	49.83	51.05
CDY60573	Canola	cytosol	49.83	50.52
Bra031513.1-P	Field mustard	cytosol	49.66	50.35
CDY24527	Canola	cytosol	49.49	50.17
VIT_01s0127g00540.t01	Wine grape	mitochondrion	13.14	49.36
VIT_01s0127g00520.t01	Wine grape	cytosol	47.61	48.95
GSMUA_Achr3P10290_001	Banana	cytosol	48.63	48.22
VIT_01s0127g00590.t01	Wine grape	cytosol	47.1	48.17
PGSC0003DMT400079611	Potato	cytosol	47.27	48.01
Solyc05g005460.2.1	Tomato	cytosol	46.25	46.64
VIT_01s0127g00600.t01	Wine grape	cytosol	46.93	45.83
EES01593	Sorghum	cytosol	25.94	38.48
EES12823	Sorghum	cytosol	23.89	35.99
VIT_01s0127g00530.t01	Wine grape	cytosol	20.14	14.62

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	UniProt:A0A1Z5S923	InterPro:DC1	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	EnsemblPlants:OQU92417
ProteinID:OQU92417	ProteinID:OQU92417.1	PFAM:PF03107	PFAM:PF13905	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR13871	PANTHER:PTHR13871:SF57	EnsemblPlantsGene:SORBI_3001G342500	SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000B4246F1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:62982617..62988490

Molecular Weight (calculated)

65177.7 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.199

Length

586 amino acids

Sequence
(BLAST)

001: MAERAITRRG GIGAILGTGD RDFLVRNSGE QVKICSIEAN TVALYFSASW CPPCRLFTPK LIQTYQELEL QQQSKKSLLE VVFVSRDRDE ESFDAYFAKM
101: PWLAVPFSDS ESIKRLMSRF KVNGIPNLVV LGAETGEIYT KEGVKFISEY GAGASPFTPA RIGELEAQER ADKASQTIHS ILGTPTRDHL ISSNGDRVPI
201: SELEGKHVAL CFLARPMGEF TAKLAEVYEK LKEIGVRFEV VAVYFRCDES VFQESFASMP WLAIPHGDSM CEKLVRYFDL RALPTLVLVG PDGKTMNSNI
301: ADVVEEHGVD AWEGFPFDDE DKMEVLIRRS KAKAATQTLE SLLVSGDLDY VVGKDGAKVP VADLVGKTVM LYFSAEWCAP CRAFLPTLVK EYGKMKERSG
401: GDDLEIVFVS VDKDQSAYDE YFSGMPWLAL PLEDERKQTL MNKFRIRAIP SLVAVGSSGA TLTTDAQSHI VAHGADAFPF TEEVLEELGR KLDEEARAWP
501: GKVMRHELHE LHELALTRRD AAVTYTCDEC EGLGSLWSYR CDRCDFDLHP KCALGKEEEE EEAEAGIEQL LQAAAYVCEG GVCRKA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.