Factsheet for VIT_01s0127g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0127g00540.t01	Wine grape	mitochondrion	26.57	97.44
VIT_01s0127g00520.t01	Wine grape	cytosol	87.24	87.54
VIT_01s0127g00590.t01	Wine grape	cytosol	84.27	84.12
KRH45656	Soybean	cytosol, nucleus	69.06	69.3
VIT_01s0127g00600.t01	Wine grape	cytosol	71.85	68.5
PGSC0003DMT400079611	Potato	cytosol	67.83	67.24
Bra031513.1-P	Field mustard	cytosol	67.13	66.44
CDY60573	Canola	cytosol	67.13	66.44
CDY24527	Canola	cytosol	66.96	66.26
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	66.96	66.26
Solyc05g005460.2.1	Tomato	cytosol	64.86	63.86
GSMUA_Achr3P10290_001	Banana	cytosol	65.73	63.62
TraesCS2B01G489600.3	Wheat	cytosol	58.04	59.5
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	58.74	58.23
HORVU2Hr1G103310.2	Barley	cytosol	58.74	58.23
Os03t0405500-01	Rice	plasma membrane	57.52	57.82
Zm00001d029457_P001	Maize	extracellular	57.17	57.47
Os03t0405900-01	Rice	cytosol, plastid	58.22	57.31
TraesCS2A01G466800.1	Wheat	cytosol	52.45	57.25
EER94707	Sorghum	cytosol	57.69	56.51
Zm00001d029459_P001	Maize	cytosol	52.8	52.07
OQU92417	Sorghum	cytosol	51.05	49.83
VIT_04s0008g02900.t01	Wine grape	cytosol	28.85	41.35
VIT_18s0001g01030.t01	Wine grape	cytosol	29.9	40.24
VIT_01s0127g00530.t01	Wine grape	cytosol	43.36	30.73

Protein Annotations

MapMan:10.6.3	EntrezGene:100852822	Gene3D:3.40.30.10	EMBL:AM472762	ProteinID:CAN77321	ProteinID:CAN77321.1
ProteinID:CCB51786	ProteinID:CCB51786.1	InterPro:DC1	UniProt:F6HHU9	EMBL:FN595761	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	GO:GO:0098869	InterPro:IPR013766
PFAM:PF03107	PFAM:PF13905	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85
SUPFAM:SSF52833	SUPFAM:SSF57889	TIGR:TC64426	TIGR:TC64650	TIGR:TC69253	InterPro:Thioredoxin-like_fold
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00021084AE	ArrayExpress:VIT_01s0127g00560	EnsemblPlantsGene:VIT_01s0127g00560
EnsemblPlants:VIT_01s0127g00560.t01	unigene:Vvi.7243	unigene:Vvi.7554	RefSeq:XP_010651402.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:7930491..7932900

Molecular Weight (calculated)

65032.2 Da

IEP (calculated)

4.719

GRAVY (calculated)

-0.385

Length

572 amino acids

Sequence
(BLAST)

001: MDSENVDGVA HDLVSLLTRE DRDFLVRNNG HQVKVESLKG KKIWLYFSAS WCGPCRRFTP KLVEAYNELS SNDDFEIIFV SGDNDDESFN GYFSKMPWLA
101: IPFSDSDARD QLNELFKVMG IPNLVMLDES GKVLSEDGVD IIQEYGVEAY PFTPEKIKEM KEKEETARKE QSLRSILVSQ SRDYVISTDG KKVPVSELEG
201: KFVGLFFSLS SYKACLEFTP TLVDVYEKLR AKGESFEIVM ISLDDEEESF KKYFGSMPWL ALPFRDKSCE KLARYFELSA LPTLVVIGPD GKTLHSNVAE
301: AIQEHGIQAY PFTPEKFAEL EEIEKAKREA QTLESILVSG DRDFVIGKDG VKIPVSDLVG KNILLYFSAH WCPPCRAFLP KLIEAYQKIK TKDEAFEVIF
401: ISSDKDQTSF DEFFSGMPWL ALPFGDKRKA SLSRTFKVHG IPSLIAIGPT GRTVTTEARN LVMIHGADAY PFTEEHIREI EAQYEEMAKG WPEKVKHALH
501: EEHELVLTKR RVYVCNGCEK QGHLWSFYCE ECDFDLHPKC ALEEDKGSKD DEMEKASPGE GWKCDGEVCY KA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.