Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY24527 | Canola | cytosol | 97.58 | 97.58 |
AT1G60420.1 | Thale cress | cytosol, nucleus, peroxisome | 87.02 | 87.02 |
VIT_01s0127g00560.t01 | Wine grape | cytosol | 66.44 | 67.13 |
VIT_01s0127g00540.t01 | Wine grape | mitochondrion | 17.99 | 66.67 |
KRH45656 | Soybean | cytosol, nucleus | 63.32 | 64.21 |
VIT_01s0127g00590.t01 | Wine grape | cytosol | 63.32 | 63.87 |
VIT_01s0127g00520.t01 | Wine grape | cytosol | 62.63 | 63.51 |
PGSC0003DMT400079611 | Potato | cytosol | 61.25 | 61.35 |
GSMUA_Achr3P10290_001 | Banana | cytosol | 60.73 | 59.39 |
VIT_01s0127g00600.t01 | Wine grape | cytosol | 61.42 | 59.17 |
Solyc05g005460.2.1 | Tomato | cytosol | 58.65 | 58.35 |
TraesCS2B01G489600.3 | Wheat | cytosol | 53.63 | 55.56 |
Os03t0405500-01 | Rice | plasma membrane | 54.67 | 55.54 |
Os03t0405900-01 | Rice | cytosol, plastid | 55.02 | 54.73 |
TraesCS2D01G466800.2 | Wheat | cytosol, golgi, unclear | 54.5 | 54.59 |
Zm00001d029457_P001 | Maize | extracellular | 53.46 | 54.31 |
TraesCS2A01G466800.1 | Wheat | cytosol | 48.96 | 54.01 |
HORVU2Hr1G103310.2 | Barley | cytosol | 53.63 | 53.73 |
EER94707 | Sorghum | cytosol | 54.15 | 53.6 |
OQU92417 | Sorghum | cytosol | 50.52 | 49.83 |
Zm00001d029459_P001 | Maize | cytosol | 49.31 | 49.14 |
CDY28251 | Canola | cytosol | 27.51 | 40.77 |
CDX68729 | Canola | cytosol | 26.82 | 39.85 |
VIT_01s0127g00530.t01 | Wine grape | cytosol | 27.85 | 19.95 |
Protein Annotations
MapMan:10.6.3 | Gene3D:3.40.30.10 | GO:A0A078J6Z6 | UniProt:A0A078J6Z6 | EnsemblPlants:CDY60573 | ProteinID:CDY60573 |
ProteinID:CDY60573.1 | ncoils:Coil | InterPro:DC1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | EnsemblPlantsGene:GSBRNA2T00029770001 | InterPro:IPR013766 | PFAM:PF03107 |
PFAM:PF13905 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF85 | SUPFAM:SSF52833 |
SUPFAM:SSF57889 | InterPro:Thioredoxin-like_fold | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0004EEEA57 |
SEG:seg | : | : | : | : | : |
Description
BnaC01g43180DBnaC01g43180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6Z6]
Coordinates
chrLK033894:+:2807..5113
Molecular Weight (calculated)
65280.2 Da
IEP (calculated)
4.603
GRAVY (calculated)
-0.440
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEIAKEVNG GDARDLHSLL FSPARDFLIR KNGEQVKIDS LKGKKIGLYF SAAWCGPCQR FTPQLVEIYN ELSSKVGFEV VFVSGDEDED SFKDYFSKMP
101: WLAVPFTDSE TRDRLDEVFK VRGIPNLVMI DDEGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEEEERA RREQTLKSVL VTPSRDFVIT RDGNKVPVSE
201: LEGKTIGLLF SVASYRQCKE FTSKLEEVYK KLKENNEDFE IVLISLEDDE DAFKQDFDTN PWLALPFNDK SSSKLTRHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV VAYPFTPEKF EELKAIEKAK LEAQTLESLL VSGDLNYVLG KDGAKVLVSE LVGKNILLYF SAHWCPPCRA FTPKLVEVYK QIKEKDEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKTSLARTFK VGGIPMLAAL GPTGKTVTKE ARDLVGAHGA DAYPFTEERV KEIEAKYTEM AKEWPEKVKH
501: ALHEEHELEL TRVPVYICDK CDEEGQIWSY HCDECDFDLH AKCALKEDAN INGDDAVKEG GGEPQDGWVC DGNVCTKS
101: WLAVPFTDSE TRDRLDEVFK VRGIPNLVMI DDEGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEEEERA RREQTLKSVL VTPSRDFVIT RDGNKVPVSE
201: LEGKTIGLLF SVASYRQCKE FTSKLEEVYK KLKENNEDFE IVLISLEDDE DAFKQDFDTN PWLALPFNDK SSSKLTRHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV VAYPFTPEKF EELKAIEKAK LEAQTLESLL VSGDLNYVLG KDGAKVLVSE LVGKNILLYF SAHWCPPCRA FTPKLVEVYK QIKEKDEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKTSLARTFK VGGIPMLAAL GPTGKTVTKE ARDLVGAHGA DAYPFTEERV KEIEAKYTEM AKEWPEKVKH
501: ALHEEHELEL TRVPVYICDK CDEEGQIWSY HCDECDFDLH AKCALKEDAN INGDDAVKEG GGEPQDGWVC DGNVCTKS
001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA
Arabidopsis Description
Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.