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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24527 Canola cytosol 97.58 97.58
AT1G60420.1 Thale cress cytosol, nucleus, peroxisome 87.02 87.02
VIT_01s0127g00560.t01 Wine grape cytosol 66.44 67.13
VIT_01s0127g00540.t01 Wine grape mitochondrion 17.99 66.67
KRH45656 Soybean cytosol, nucleus 63.32 64.21
VIT_01s0127g00590.t01 Wine grape cytosol 63.32 63.87
VIT_01s0127g00520.t01 Wine grape cytosol 62.63 63.51
PGSC0003DMT400079611 Potato cytosol 61.25 61.35
GSMUA_Achr3P10290_001 Banana cytosol 60.73 59.39
VIT_01s0127g00600.t01 Wine grape cytosol 61.42 59.17
Solyc05g005460.2.1 Tomato cytosol 58.65 58.35
TraesCS2B01G489600.3 Wheat cytosol 53.63 55.56
Os03t0405500-01 Rice plasma membrane 54.67 55.54
Os03t0405900-01 Rice cytosol, plastid 55.02 54.73
TraesCS2D01G466800.2 Wheat cytosol, golgi, unclear 54.5 54.59
Zm00001d029457_P001 Maize extracellular 53.46 54.31
TraesCS2A01G466800.1 Wheat cytosol 48.96 54.01
HORVU2Hr1G103310.2 Barley cytosol 53.63 53.73
EER94707 Sorghum cytosol 54.15 53.6
OQU92417 Sorghum cytosol 50.52 49.83
Zm00001d029459_P001 Maize cytosol 49.31 49.14
CDY28251 Canola cytosol 27.51 40.77
CDX68729 Canola cytosol 26.82 39.85
VIT_01s0127g00530.t01 Wine grape cytosol 27.85 19.95
Protein Annotations
MapMan:10.6.3Gene3D:3.40.30.10GO:A0A078J6Z6UniProt:A0A078J6Z6EnsemblPlants:CDY60573ProteinID:CDY60573
ProteinID:CDY60573.1ncoils:CoilInterPro:DC1GO:GO:0005575GO:GO:0005623GO:GO:0008150
GO:GO:0009987GO:GO:0019725GO:GO:0045454EnsemblPlantsGene:GSBRNA2T00029770001InterPro:IPR013766PFAM:PF03107
PFAM:PF13905ScanProsite:PS00194PFscan:PS51352PANTHER:PTHR13871PANTHER:PTHR13871:SF85SUPFAM:SSF52833
SUPFAM:SSF57889InterPro:Thioredoxin-like_foldInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_CSInterPro:Thioredoxin_domainUniParc:UPI0004EEEA57
SEG:seg:::::
Description
BnaC01g43180DBnaC01g43180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6Z6]
Coordinates
chrLK033894:+:2807..5113
Molecular Weight (calculated)
65280.2 Da
IEP (calculated)
4.603
GRAVY (calculated)
-0.440
Length
578 amino acids
Sequence
(BLAST)
001: MAEIAKEVNG GDARDLHSLL FSPARDFLIR KNGEQVKIDS LKGKKIGLYF SAAWCGPCQR FTPQLVEIYN ELSSKVGFEV VFVSGDEDED SFKDYFSKMP
101: WLAVPFTDSE TRDRLDEVFK VRGIPNLVMI DDEGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEEEERA RREQTLKSVL VTPSRDFVIT RDGNKVPVSE
201: LEGKTIGLLF SVASYRQCKE FTSKLEEVYK KLKENNEDFE IVLISLEDDE DAFKQDFDTN PWLALPFNDK SSSKLTRHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV VAYPFTPEKF EELKAIEKAK LEAQTLESLL VSGDLNYVLG KDGAKVLVSE LVGKNILLYF SAHWCPPCRA FTPKLVEVYK QIKEKDEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKTSLARTFK VGGIPMLAAL GPTGKTVTKE ARDLVGAHGA DAYPFTEERV KEIEAKYTEM AKEWPEKVKH
501: ALHEEHELEL TRVPVYICDK CDEEGQIWSY HCDECDFDLH AKCALKEDAN INGDDAVKEG GGEPQDGWVC DGNVCTKS
Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)
001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA
Arabidopsis Description
Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.