Factsheet for Zm00001d029457_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94707	Sorghum	cytosol	91.92	89.55
HORVU2Hr1G103310.2	Barley	cytosol	79.44	78.34
TraesCS2B01G489600.3	Wheat	cytosol	76.27	77.78
Zm00001d029459_P001	Maize	cytosol	79.26	77.76
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	78.38	77.3
TraesCS2A01G466800.1	Wheat	cytosol	71.18	77.29
Os03t0405500-01	Rice	plasma membrane	75.22	75.22
Os03t0405900-01	Rice	cytosol, plastid	76.1	74.53
VIT_01s0127g00540.t01	Wine grape	mitochondrion	15.82	57.69
VIT_01s0127g00560.t01	Wine grape	cytosol	57.47	57.17
GSMUA_Achr3P10290_001	Banana	cytosol	58.17	56.01
KRH45656	Soybean	cytosol, nucleus	56.06	55.96
VIT_01s0127g00520.t01	Wine grape	cytosol	55.18	55.09
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	55.89	55.02
VIT_01s0127g00590.t01	Wine grape	cytosol	54.48	54.1
CDY60573	Canola	cytosol	54.31	53.46
Bra031513.1-P	Field mustard	cytosol	53.95	53.11
CDY24527	Canola	cytosol	53.95	53.11
PGSC0003DMT400079611	Potato	cytosol	53.6	52.86
VIT_01s0127g00600.t01	Wine grape	cytosol	54.31	51.5
Solyc05g005460.2.1	Tomato	cytosol	52.2	51.12
Zm00001d011007_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	16.87	38.55
Zm00001d021986_P001	Maize	endoplasmic reticulum, plasma membrane	16.87	38.55
Zm00001d018942_P001	Maize	cytosol	21.27	37.58
Zm00001d018769_P001	Maize	endoplasmic reticulum, plasma membrane	19.33	36.79
Zm00001d012591_P001	Maize	cytosol	25.66	36.68
Zm00001d026266_P001	Maize	plastid	27.24	33.7
Zm00001d033946_P001	Maize	plastid	15.82	25.71
VIT_01s0127g00530.t01	Wine grape	cytosol	22.85	16.11

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	UniProt:A0A1D6K5D2	InterPro:DC1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004791	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
GO:GO:0098869	InterPro:IPR013766	ProteinID:ONL98792.1	PFAM:PF03107	PFAM:PF13905	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF57	SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000221F41A	EnsemblPlantsGene:Zm00001d029457	EnsemblPlants:Zm00001d029457_P001
EnsemblPlants:Zm00001d029457_T001	SEG:seg	:	:	:	:

Description

nucleoredoxin1 nucleoredoxin1

Coordinates

chr1:+:71670964..71675538

Molecular Weight (calculated)

63332.0 Da

IEP (calculated)

4.512

GRAVY (calculated)

-0.273

Length

569 amino acids

Sequence
(BLAST)

001: MAEAAPAAGG GIGDILATSD RDFLVRNSGE QVKISSVEAS PVAIYFSASW CPPCRRFTPK LIEVYEKLAS QGKSFEVVFA SADRNEEAFN EYFAKMPWLA
101: VPFSDSEGRE ALDGQFKVSG IPHLVILDAK TGEVYTEDGV EFVSEYGVEA YPFTPDRINE LKEQEKAEKE NQTIQSVLGT STRDYLISNK GDKVPISELE
201: GKYVGLCFVV DGFPPLAEFT EVLAKIYEKL KEVGEKFEVV AVSLDSEESS FNESFAKMPW LAIPQGDIKC QTLVRYFELS SLPTLVLIGP DGKTLNNNVA
301: DIIDDHGFEA WEGFPFSAEK LEILAEKAKI KAASQTLESI LISGHLDFVI GKDGAKVPVS ELVGKTVLVY FSAKWCPPCR AFLPTLVKEY NKIKEKNSDF
401: EIVFISSDED QSSFDDFFSE MPWLAVPWED ERKASLKKTF KIRGIPSLVA IGPTGQTVSR DAKSQLMIHG ADAFPFTEER LEELQKKLDE MAKGWPQKLK
501: HELHDEHELV LLRRGTYRCD GCNEMGSSWS YRCDECDFDL HPKCALGEEK MGEEAPAGYV CEGGVCRKA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.