Factsheet for Os03t0405500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0405900-01	Rice	cytosol, plastid	84.18	82.44
EER94707	Sorghum	cytosol	77.5	75.51
HORVU2Hr1G103310.2	Barley	cytosol	76.45	75.39
TraesCS2B01G489600.3	Wheat	cytosol	73.81	75.27
Zm00001d029457_P001	Maize	extracellular	75.22	75.22
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	75.4	74.35
TraesCS2A01G466800.1	Wheat	cytosol	68.19	74.05
Zm00001d029459_P001	Maize	cytosol	66.96	65.69
OQU92417	Sorghum	cytosol	65.38	63.48
VIT_01s0127g00560.t01	Wine grape	cytosol	57.82	57.52
KRH45656	Soybean	cytosol, nucleus	57.29	57.19
VIT_01s0127g00540.t01	Wine grape	mitochondrion	15.47	56.41
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	56.41	55.54
VIT_01s0127g00520.t01	Wine grape	cytosol	55.01	54.91
Bra031513.1-P	Field mustard	cytosol	55.54	54.67
CDY60573	Canola	cytosol	55.54	54.67
CDY24527	Canola	cytosol	55.36	54.5
GSMUA_Achr3P10290_001	Banana	cytosol	56.59	54.48
VIT_01s0127g00590.t01	Wine grape	cytosol	54.48	54.1
PGSC0003DMT400079611	Potato	cytosol	54.48	53.73
VIT_01s0127g00600.t01	Wine grape	cytosol	55.36	52.5
Solyc05g005460.2.1	Tomato	cytosol	52.2	51.12
Os01t0794400-01	Rice	cytosol, extracellular	27.07	39.09
Os04t0608600-01	Rice	cytosol, peroxisome	12.48	35.68
VIT_01s0127g00530.t01	Wine grape	cytosol	22.67	15.99

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	EntrezGene:4333075	ProteinID:AAP50936.1	ProteinID:ABF96507.1	EMBL:AK069583
ProteinID:BAF12243.1	ProteinID:BAS84629.1	ProteinID:BAS84630.1	ncoils:Coil	InterPro:DC1	ProteinID:EAZ27269.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019725
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EnsemblPlantsGene:Os03g0405500
EnsemblPlants:Os03t0405500-01	PFAM:PF03107	PFAM:PF13905	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR13871
PANTHER:PTHR13871:SF57	UniProt:Q7Y0E8	SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00001A3B34	RefSeq:XP_015630417.1	SEG:seg	:

Description

Similar to PDI-like protein. (Os03t0405500-01);Hypothetical conserved gene. (Os03t0405500-02)

Coordinates

chr3:+:16590192..16595911

Molecular Weight (calculated)

63292.1 Da

IEP (calculated)

4.687

GRAVY (calculated)

-0.318

Length

569 amino acids

Sequence
(BLAST)

001: MADAAGIATV LAADGRDFLL RNSADQVKIS SIEASTVALY FSASWCPPCR RFTPKLIEAY NELVSQGKNF EVVFVSGDKD QEAFDAYFAK MPWLAVPFSD
101: SECRAKLNKR FKVRGIPHLV ILNATSGEVY TEDGVELVTV HGTEAYPFTT ERINELKEQE KAAKDNQTVQ SVLGTPTRDY LLSNKGDRVP ISDLEGKYVG
201: LCFVVNGYGP VVQFTSLLAK FYEKLKEVGE KFEVVAVSLD SDEELSNESF AGMPWLAIPQ EDKMGEKLAR YFELRGLPTL VLIGPDGKTL NNNVADIIDE
301: HGQDAWEGFP FTAEKMEILA EKAKAKAELQ TLESLLVIGD LDFVLGKDGA KVPVSELVGK TVLLYFSAKW CGPCRAFLPK LVDEYNKIKE KHNDFEIIFI
401: SSDRDQSSYD EFFSGMPWLA LPLGDERKQH LSKTFRVRGI PSLVAIGADG RTVARDAKTP LTAHGADAFP FTEERLLEME RKIDEMAKGW PGKLKHELHD
501: EHELVLTRCT TYGCDGCDEM GSSWSYRCRE CDFDLHPKCA LGKEEEKKGD DEAEAEADPA CEGGVCRKA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.