Factsheet for TraesCS2D01G466800.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G466800.1	Wheat	cytosol	88.73	97.71
TraesCS2B01G489600.3	Wheat	cytosol	94.28	97.49
HORVU2Hr1G103310.2	Barley	cytosol	94.11	94.11
Zm00001d029457_P001	Maize	extracellular	77.3	78.38
EER94707	Sorghum	cytosol	78.86	77.91
Os03t0405900-01	Rice	cytosol, plastid	76.43	75.9
Os03t0405500-01	Rice	plasma membrane	74.35	75.4
Zm00001d029459_P001	Maize	cytosol	67.94	67.59
OQU92417	Sorghum	cytosol	63.78	62.8
VIT_01s0127g00540.t01	Wine grape	mitochondrion	16.12	59.62
VIT_01s0127g00560.t01	Wine grape	cytosol	58.23	58.74
KRH45656	Soybean	cytosol, nucleus	55.46	56.14
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	55.81	55.71
GSMUA_Achr3P10290_001	Banana	cytosol	57.02	55.67
VIT_01s0127g00520.t01	Wine grape	cytosol	54.94	55.61
PGSC0003DMT400079611	Potato	cytosol	55.11	55.11
VIT_01s0127g00590.t01	Wine grape	cytosol	54.59	54.97
Bra031513.1-P	Field mustard	cytosol	54.59	54.5
CDY60573	Canola	cytosol	54.59	54.5
CDY24527	Canola	cytosol	54.42	54.33
Solyc05g005460.2.1	Tomato	cytosol	53.21	52.84
VIT_01s0127g00600.t01	Wine grape	cytosol	54.94	52.83
TraesCS3D01G320500.1	Wheat	cytosol	26.17	38.32
VIT_01s0127g00530.t01	Wine grape	cytosol	22.7	16.23

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	ncoils:Coil	InterPro:DC1	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009605
GO:GO:0009653	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0010183	GO:GO:0016043
GO:GO:0016049	GO:GO:0019725	GO:GO:0030154	GO:GO:0040007	GO:GO:0045454	GO:GO:0046686
GO:GO:0080092	InterPro:IPR013766	PFAM:PF03107	PFAM:PF13905	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR13871	PANTHER:PTHR13871:SF57	SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS2D01G466800	EnsemblPlants:TraesCS2D01G466800.2	TIGR:cd03009	SEG:seg

Description

No Description!

Coordinates

chr2D:-:572079806..572083708

Molecular Weight (calculated)

63684.4 Da

IEP (calculated)

4.563

GRAVY (calculated)

-0.246

Length

577 amino acids

Sequence
(BLAST)

001: MAASSPTPGG GLGAILAAGD RDYLIRNSGE QVKISSIEGD TVAIYFSASW CPPCQRFTPK LIEAYKELTS HGKSFEVIFV SGDQDEEAFN AYFAKMPWLA
101: VPFSDSEGRK SLDERFEVNG IPHLVFLDAK TGEVLTDEGV EFVSEYGIEA YPFTTERINE LKEQEKAAKD NQTIHSVLAT PNRNYVISNT GEKVPIVDLE
201: GKYVGICFVV NGYPPVEEFT PVLAKIYAKL KEVGEKFEVV AVSLDSDEES FNNSFSSMPW LAIPQGDKMC QKLVSYFELS DLPTLVLIGP DGKTLSSNIA
301: DIINEHGLDA WEGFPFNAEK LEILAEKAKA KAASQTLESL LVTGDVDFVI GKDGAKVPVA ELVGKTVLLY FSAKWCGPCR AFLPTLVDVY NKIKEKNSDF
401: EIVFISSDRD QSSFDDFFSG MPWLAIPLED ERKAYLKKKF KIRGIPSLVA IGPDGKTVNT DAKTSLAVHG ADAFPFTSER IQELEKKIDE MAKGWPEKVK
501: HELHEHELVL IRRPRPYGCD GCEEMGTSWS YNCAECDFDL HAKCALGEEK KGEEVNGQEH AAAPAGYVCE GDVCRKA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.