Factsheet for Solyc05g005460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079611	Potato	cytosol	88.98	89.6
VIT_01s0127g00540.t01	Wine grape	mitochondrion	17.73	66.03
VIT_01s0127g00560.t01	Wine grape	cytosol	63.86	64.86
VIT_01s0127g00520.t01	Wine grape	cytosol	62.65	63.86
KRH45656	Soybean	cytosol, nucleus	61.79	62.98
VIT_01s0127g00590.t01	Wine grape	cytosol	61.62	62.48
CDY60573	Canola	cytosol	58.35	58.65
VIT_01s0127g00600.t01	Wine grape	cytosol	60.41	58.5
Bra031513.1-P	Field mustard	cytosol	57.49	57.79
CDY24527	Canola	cytosol	57.31	57.61
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	56.63	56.92
GSMUA_Achr3P10290_001	Banana	cytosol	56.11	55.16
TraesCS2B01G489600.3	Wheat	cytosol	51.81	53.94
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	52.84	53.21
HORVU2Hr1G103310.2	Barley	cytosol	52.67	53.03
TraesCS2A01G466800.1	Wheat	cytosol	47.16	52.29
Os03t0405500-01	Rice	plasma membrane	51.12	52.2
Zm00001d029457_P001	Maize	extracellular	51.12	52.2
Os03t0405900-01	Rice	cytosol, plastid	51.64	51.64
Solyc05g005470.2.1	Tomato	cytosol	46.99	50.56
EER94707	Sorghum	cytosol	50.77	50.51
Zm00001d029459_P001	Maize	cytosol	46.3	46.38
OQU92417	Sorghum	cytosol	46.64	46.25
Solyc04g081900.2.1	Tomato	cytosol	27.19	35.91
VIT_01s0127g00530.t01	Wine grape	cytosol	24.44	17.6

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	ncoils:Coil	InterPro:DC1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	GO:GO:0098869	InterPro:IPR013766	UniProt:K4BW77
PFAM:PF03107	PFAM:PF13905	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF57
SUPFAM:SSF52833	SUPFAM:SSF57889	EnsemblPlantsGene:Solyc05g005460.2	EnsemblPlants:Solyc05g005460.2.1	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002766E0E	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:341827..347358

Molecular Weight (calculated)

66447.0 Da

IEP (calculated)

4.560

GRAVY (calculated)

-0.432

Length

581 amino acids

Sequence
(BLAST)

001: MNGLWKLVVK LDTLKEKKIG FYFSASWCGP CKHFTPNLVE AYNALLPKGD FEVVFLTADM DDESFKEYFS KMPWLAVPFS DSETRKRLNE LFAVRGIPHL
101: VILDASGKVV TNSGVEIIVE HGVEGYPFTQ ERLNELKEQE ETAKREQSLK SILESQSRNY VIAADGRKVP VAELEGKIIG LYMSMASFEE CESFTGKLIE
201: MYDKLKSQGE NFEIVMIPLD DEDDDESFKK EFSRMPWFSL PLKDKTCKKL ARYFELSTLP TLVIIGTDGK TLHSNVAEAV EEHGILAYPF SHEKFAELEQ
301: IQKAKLEAQT LESILVTRDR DFVIGKDGEK ILVSDLVGKT ILLYFSAHWC PPCRAFTPQL KEAYETIKSK NGPLEVIFLS SDQDQASFDE YFATMPWLAL
401: PFGDERKTYL SRLFKVRGIP TLVAVGPSGK TVTTDARSLI MCHGAKAFPF TEERMEEIEA ETAEMAKGWP EKIMHKLHEH ELLLSKRSAY NCDVCEELGQ
501: IWSFYCEECD FDMHPKCALE EEKESNMDIE EDQKDHMHPN YALEEEKESN MDIEEDQKDQ GKEEQKTNEG WICDGEVCFK G

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.