Factsheet for VIT_01s0127g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0127g00560.t01	Wine grape	cytosol	30.73	43.36
VIT_01s0127g00520.t01	Wine grape	cytosol	25.53	36.14
VIT_01s0127g00590.t01	Wine grape	cytosol	24.78	34.9
VIT_01s0127g00600.t01	Wine grape	cytosol	21.07	28.33
Bra031513.1-P	Field mustard	cytosol	20.2	28.2
CDY24527	Canola	cytosol	20.2	28.2
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	20.2	28.2
KRH45656	Soybean	cytosol, nucleus	19.83	28.07
CDY60573	Canola	cytosol	19.95	27.85
PGSC0003DMT400079611	Potato	cytosol	19.33	27.04
GSMUA_Achr3P10290_001	Banana	cytosol	19.08	26.06
TraesCS2A01G466800.1	Wheat	cytosol	15.99	24.62
Solyc05g005460.2.1	Tomato	cytosol	17.6	24.44
TraesCS2B01G489600.3	Wheat	cytosol	16.36	23.66
Os03t0405900-01	Rice	cytosol, plastid	16.6	23.06
Zm00001d029457_P001	Maize	extracellular	16.11	22.85
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	16.23	22.7
Os03t0405500-01	Rice	plasma membrane	15.99	22.67
HORVU2Hr1G103310.2	Barley	cytosol	16.11	22.53
EER94707	Sorghum	cytosol	16.11	22.26
VIT_18s0001g01030.t01	Wine grape	cytosol	11.03	20.94
Zm00001d029459_P001	Maize	cytosol	14.75	20.52
OQU92417	Sorghum	cytosol	14.62	20.14
VIT_04s0008g02900.t01	Wine grape	cytosol	9.91	20.05
VIT_01s0127g00540.t01	Wine grape	mitochondrion	0.25	1.28

Protein Annotations

ArrayExpress:VIT_01s0127g00530	EnsemblPlants:VIT_01s0127g00530.t01	EnsemblPlantsGene:VIT_01s0127g00530	Gene3D:3.40.30.10	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
ncoils:Coil	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	PFAM:PF13905	PFscan:PS51352	SEG:seg
SUPFAM:SSF52833	UniParc:UPI0001BE3149	MapMan:10.6.3	:	:	:

Description

No Description!

Coordinates

chr1:-:7904820..7907575

Molecular Weight (calculated)

29594.0 Da

IEP (calculated)

4.471

GRAVY (calculated)

-0.109

Length

807 amino acids

Sequence
(BLAST)

001: MDSENVDGVA HDLVSLLTRE DRDFLVRNNG HQVKVESLKG KKIWLYFSAS WCGPCRRFTP KLVEAYNELS SNDDFEIIFV SGDNDDESFH GYFSKMPWLA
101: IPFSDSDARD QLNELFKVMG IPNLVMLDES GKVLSEDGVD IIQEYGVEAY PFTPEKIKEM KEKEETARKE QSLRSILVSQ SRDYVISTDG KKVPVSELEG
201: KFVGLFFSLS SYKACLEFTP TLVDVYEKLR AKGESFEIVM ISLDDEXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXNLYKI
801: SYLRFNF

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.