Factsheet for GSMUA_Achr3P10290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0127g00540.t01	Wine grape	mitochondrion	18.1	68.59
VIT_01s0127g00560.t01	Wine grape	cytosol	63.62	65.73
VIT_01s0127g00590.t01	Wine grape	cytosol	61.08	63.0
KRH45656	Soybean	cytosol, nucleus	60.74	62.98
VIT_01s0127g00520.t01	Wine grape	cytosol	59.56	61.75
GSMUA_Achr2P15050_001	Banana	cytosol	40.27	61.34
Bra031513.1-P	Field mustard	cytosol	59.56	60.9
CDY60573	Canola	cytosol	59.39	60.73
CDY24527	Canola	cytosol	59.39	60.73
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	58.38	59.69
VIT_01s0127g00600.t01	Wine grape	cytosol	60.07	59.17
PGSC0003DMT400079611	Potato	cytosol	57.7	59.1
Zm00001d029457_P001	Maize	extracellular	56.01	58.17
TraesCS2B01G489600.3	Wheat	cytosol	54.82	58.06
HORVU2Hr1G103310.2	Barley	cytosol	56.01	57.37
TraesCS2A01G466800.1	Wheat	cytosol	50.59	57.06
EER94707	Sorghum	cytosol	56.35	57.02
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	55.67	57.02
Os03t0405500-01	Rice	plasma membrane	54.48	56.59
Solyc05g005460.2.1	Tomato	cytosol	55.16	56.11
Os03t0405900-01	Rice	cytosol, plastid	54.99	55.94
Zm00001d029459_P001	Maize	cytosol	50.76	51.72
GSMUA_Achr2P15060_001	Banana	nucleus	11.17	50.77
OQU92417	Sorghum	cytosol	48.22	48.63
GSMUA_Achr9P11600_001	Banana	cytosol	27.92	41.25
GSMUA_Achr6P02410_001	Banana	cytosol	42.81	38.86
VIT_01s0127g00530.t01	Wine grape	cytosol	26.06	19.08

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	ncoils:Coil	InterPro:DC1	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009605
GO:GO:0009653	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0010183	GO:GO:0016043
GO:GO:0016049	GO:GO:0019725	GO:GO:0030154	GO:GO:0040007	GO:GO:0045454	GO:GO:0046686
GO:GO:0080092	EnsemblPlantsGene:GSMUA_Achr3G10290_001	EnsemblPlants:GSMUA_Achr3P10290_001	EnsemblPlants:GSMUA_Achr3T10290_001	InterPro:IPR013766	UniProt:M0SDE6
PFAM:PF03107	PFAM:PF13905	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85
SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI000295D68A	SEG:seg	:	:	:	:

Description

Probable nucleoredoxin 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G10290_001]

Coordinates

chr3:+:7440571..7446889

Molecular Weight (calculated)

66609.1 Da

IEP (calculated)

4.430

GRAVY (calculated)

-0.394

Length

591 amino acids

Sequence
(BLAST)

001: MAEHDAESNG ELNGHEETTH DLQSLLASVG RDFLVRNTGD QVKISNLDGK IVGLYFSASW CGPCKRFTPK LVETYNELSS ENGNFEIVFV SADEDEKSFT
101: DYFSKMPWFA IPFSDSDIRD RLNDLFDVGG IPYLVIFDVN GKVLTSVGVQ VVRDYGSNAY PFTDERIQKL KEEEEAAKQN QTLRSLLVSS SRDFVISKDG
201: NKVPVSELQG KIVGIFFSIS SFNSCSEFAK SLKEMYLKLK ENGENFEVVL VSLDDEESSY EQGFADMPWL AIPFKDKICD KLVRYFELDS IPTLVVIGSD
301: GKTLNSNVAE LIEEHGIEAY PFSPEKLEEI AEKEKARIEA QTLESLLASG EQDYVIGNGG IRVPVSELVG KNILLYFSAQ WCPPCRMFLP KLIEAYHKIK
401: EKDDAFEIIF VSNDRDESSF HDFFSEMPWL ALPFGDERKK FLARTFKIYG IPSLVAIGPT GKTVTTEARE LVMTHGAAAY PFTKERIQEI EAEIEEMAKG
501: WPEKLKHKLH EQHELVKSHR RSYICDACNE EGSGWSFYCD DCDFDLHPKC AFNDDEVANG VGDSHSDGPG EEQRENGKEG YICDGEVCYK A

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.