Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079607 | Potato | cytosol | 29.23 | 28.79 |
| GSMUA_Achr6P02410_001 | Banana | cytosol | 62.31 | 12.44 |
| GSMUA_Achr9P11600_001 | Banana | cytosol | 36.92 | 12.0 |
| GSMUA_Achr3P10290_001 | Banana | cytosol | 50.77 | 11.17 |
| Solyc05g005470.2.1 | Tomato | cytosol | 40.77 | 9.81 |
| GSMUA_Achr2P15050_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P15060_001 | EnsemblPlants:GSMUA_Achr2T15060_001 | EnsemblPlantsGene:GSMUA_Achr2G15060_001 | Gene3D:3.40.30.10 | InterPro:Thioredoxin-like_fold | InterPro:Thioredoxin-like_sf |
| PANTHER:PTHR13871 | PANTHER:PTHR13871:SF85 | PFAM:PF13905 | SEG:seg | SUPFAM:SSF52833 | UniParc:UPI00029485C1 |
| UniProt:M0S847 | MapMan:10.6.3 | : | : | : | : |
Description
Putative Probable nucleoredoxin 1-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G15060_001]
Coordinates
chr2:+:16542478..16543060
Molecular Weight (calculated)
15075.1 Da
IEP (calculated)
9.654
GRAVY (calculated)
-0.395
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSFEVVFI SSDRDQDSFE EFFSGMPWLA LPFGDERRKS LSRTFRVRGI PSLVAIGPTG RTLTKDARNL LTIHGADAYP FSEERIKERR RRKTKMKNMM
101: EGYACDGAVC REVFLRFWLV SVRTTEFYGV
101: EGYACDGAVC REVFLRFWLV SVRTTEFYGV
001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA
Arabidopsis Description
Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.