Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031513.1-P | Field mustard | cytosol | 87.2 | 87.2 |
| CDY24527 | Canola | cytosol | 87.02 | 87.02 |
| CDY60573 | Canola | cytosol | 87.02 | 87.02 |
| VIT_01s0127g00560.t01 | Wine grape | cytosol | 66.26 | 66.96 |
| VIT_01s0127g00540.t01 | Wine grape | mitochondrion | 17.65 | 65.38 |
| KRH45656 | Soybean | cytosol, nucleus | 63.32 | 64.21 |
| VIT_01s0127g00590.t01 | Wine grape | cytosol | 62.28 | 62.83 |
| VIT_01s0127g00520.t01 | Wine grape | cytosol | 61.76 | 62.63 |
| PGSC0003DMT400079611 | Potato | cytosol | 58.65 | 58.75 |
| VIT_01s0127g00600.t01 | Wine grape | cytosol | 60.9 | 58.67 |
| GSMUA_Achr3P10290_001 | Banana | cytosol | 59.69 | 58.38 |
| TraesCS2B01G489600.3 | Wheat | cytosol | 54.84 | 56.81 |
| Solyc05g005460.2.1 | Tomato | cytosol | 56.92 | 56.63 |
| Os03t0405500-01 | Rice | plasma membrane | 55.54 | 56.41 |
| Zm00001d029457_P001 | Maize | extracellular | 55.02 | 55.89 |
| TraesCS2D01G466800.2 | Wheat | cytosol, golgi, unclear | 55.71 | 55.81 |
| TraesCS2A01G466800.1 | Wheat | cytosol | 49.83 | 54.96 |
| HORVU2Hr1G103310.2 | Barley | cytosol | 54.84 | 54.94 |
| EER94707 | Sorghum | cytosol | 55.19 | 54.62 |
| Os03t0405900-01 | Rice | cytosol, plastid | 54.15 | 53.87 |
| OQU92417 | Sorghum | cytosol | 51.56 | 50.85 |
| Zm00001d029459_P001 | Maize | cytosol | 50.0 | 49.83 |
| AT4G31240.2 | Thale cress | cytosol | 27.51 | 40.56 |
| VIT_01s0127g00530.t01 | Wine grape | cytosol | 28.2 | 20.2 |
Protein Annotations
| MapMan:10.6.3 | PDB:1V5N | Gene3D:3.40.30.10 | EntrezGene:842337 | ProteinID:AAC24068.1 | ProteinID:AEE33684.1 |
| ArrayExpress:AT1G60420 | EnsemblPlantsGene:AT1G60420 | RefSeq:AT1G60420 | TAIR:AT1G60420 | RefSeq:AT1G60420-TAIR-G | EnsemblPlants:AT1G60420.1 |
| TAIR:AT1G60420.1 | EMBL:AY065433 | EMBL:AY087396 | EMBL:AY117231 | Unigene:At.10685 | ncoils:Coil |
| InterPro:DC1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009605 | GO:GO:0009653 | GO:GO:0009856 | GO:GO:0009860 | GO:GO:0009987 | GO:GO:0010183 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016491 | GO:GO:0019725 | GO:GO:0030154 | GO:GO:0040007 |
| GO:GO:0045454 | GO:GO:0046686 | GO:GO:0047134 | GO:GO:0055114 | GO:GO:0080092 | GO:GO:0098869 |
| InterPro:IPR013766 | RefSeq:NP_564756.1 | UniProt:O80763 | PFAM:PF03107 | PFAM:PF13905 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00194 | PFscan:PS51352 |
| PANTHER:PTHR13871 | PANTHER:PTHR13871:SF85 | SUPFAM:SSF52833 | SUPFAM:SSF57889 | InterPro:Thioredoxin-like_fold | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI00000AA392 | SEG:seg | : | : |
Description
Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
Coordinates
chr1:+:22261754..22264408
Molecular Weight (calculated)
65173.1 Da
IEP (calculated)
4.634
GRAVY (calculated)
-0.427
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.