Factsheet for PGSC0003DMT400079611

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005460.2.1	Tomato	cytosol	89.6	88.98
VIT_01s0127g00560.t01	Wine grape	cytosol	67.24	67.83
VIT_01s0127g00520.t01	Wine grape	cytosol	66.03	66.84
VIT_01s0127g00540.t01	Wine grape	mitochondrion	18.02	66.67
KRH45656	Soybean	cytosol, nucleus	65.16	65.96
VIT_01s0127g00590.t01	Wine grape	cytosol	65.34	65.79
VIT_01s0127g00600.t01	Wine grape	cytosol	64.82	62.33
CDY60573	Canola	cytosol	61.35	61.25
Bra031513.1-P	Field mustard	cytosol	61.18	61.07
CDY24527	Canola	cytosol	61.01	60.9
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	58.75	58.65
GSMUA_Achr3P10290_001	Banana	cytosol	59.1	57.7
TraesCS2B01G489600.3	Wheat	cytosol	53.9	55.73
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	55.11	55.11
HORVU2Hr1G103310.2	Barley	cytosol	54.59	54.59
Os03t0405500-01	Rice	plasma membrane	53.73	54.48
Os03t0405900-01	Rice	cytosol, plastid	54.59	54.22
TraesCS2A01G466800.1	Wheat	cytosol	49.22	54.2
Zm00001d029457_P001	Maize	extracellular	52.86	53.6
EER94707	Sorghum	cytosol	52.51	51.88
OQU92417	Sorghum	cytosol	48.01	47.27
Zm00001d029459_P001	Maize	cytosol	47.49	47.24
PGSC0003DMT400079607	Potato	cytosol	10.57	46.21
PGSC0003DMT400025576	Potato	cytosol	28.08	36.82
VIT_01s0127g00530.t01	Wine grape	cytosol	27.04	19.33

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	ncoils:Coil	InterPro:DC1	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	UniProt:M1D253
PFAM:PF03107	PFAM:PF13905	EnsemblPlantsGene:PGSC0003DMG400031000	PGSC:PGSC0003DMG400031000	EnsemblPlants:PGSC0003DMT400079611	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000295FD84	SEG:seg	:

Description

Nucleoredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400031000]

Coordinates

chr5:-:8392953..8396882

Molecular Weight (calculated)

65377.8 Da

IEP (calculated)

4.780

GRAVY (calculated)

-0.411

Length

577 amino acids

Sequence
(BLAST)

001: MAGENCHDVI KLLGSSDRDF LIRNNGDKVK LDTLKEKKIG LYFSASWCGP CKHFTPNLVE AYNGLLPNGD FEVVFLTADK DDESFKEYFS KMPWLAVPFS
101: DSETRKRLNE LFAVRGIPHL VILDASGKVV TNSGVEIIVE HGVEGYPFTQ ERLSELKEQE ETAKREQSLK SILESQSRNY VIAADGRKVP VADLEGKIIG
201: LYFSMTSFKG CESFTRKLIE MYDKLKAQEG NFEIVMIPLD DEDEDESFKK EFSRMPWFSL PLKDKTCEKL ARYFELSTLP TLVIIGTDGK TLHSNVAEAV
301: EEHGILAYPF TPEKYAELEQ IQKAKLEAQT LESILVTGDH DFVIGKDGEK ILVSDLVGKN ILLYFSAHWC PPCRAFTPQL KEAYETIKAK NGPLEVIFIS
401: SDRDQASFDD YFASMPWLAL PFGDERKTYL SRLFKVRGIP TLVAVGPSGK TVTTGARNLI MSHGAKAFPF TEERMKEIEA ETAEMAKGWP EKIMHKLHEH
501: ELLLSKRSAY NCDVCDEAGQ IWSFYCEECD FDMHPKCALE EKKESNMDTE EDQKDQGKEE QKANEGWICD GEVCFKG

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.