Factsheet for VIT_01s0127g00520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0127g00540.t01	Wine grape	mitochondrion	24.21	88.46
VIT_01s0127g00590.t01	Wine grape	cytosol	88.25	87.78
VIT_01s0127g00560.t01	Wine grape	cytosol	87.54	87.24
VIT_01s0127g00600.t01	Wine grape	cytosol	70.7	67.17
PGSC0003DMT400079611	Potato	cytosol	66.84	66.03
KRH45656	Soybean	cytosol, nucleus	65.79	65.79
Solyc05g005460.2.1	Tomato	cytosol	63.86	62.65
CDY60573	Canola	cytosol	63.51	62.63
Bra031513.1-P	Field mustard	cytosol	62.81	61.94
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	62.63	61.76
CDY24527	Canola	cytosol	62.46	61.59
GSMUA_Achr3P10290_001	Banana	cytosol	61.75	59.56
TraesCS2B01G489600.3	Wheat	cytosol	55.09	56.27
Zm00001d029457_P001	Maize	extracellular	55.09	55.18
Os03t0405500-01	Rice	plasma membrane	54.91	55.01
HORVU2Hr1G103310.2	Barley	cytosol	55.61	54.94
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	55.61	54.94
EER94707	Sorghum	cytosol	55.26	53.94
TraesCS2A01G466800.1	Wheat	cytosol	49.47	53.82
Os03t0405900-01	Rice	cytosol, plastid	54.21	53.18
Zm00001d029459_P001	Maize	cytosol	50.53	49.66
OQU92417	Sorghum	cytosol	48.95	47.61
VIT_04s0008g02900.t01	Wine grape	cytosol	27.89	39.85
VIT_18s0001g01030.t01	Wine grape	cytosol	29.12	39.06
VIT_01s0127g00530.t01	Wine grape	cytosol	36.14	25.53

Protein Annotations

MapMan:10.6.3	EntrezGene:100244715	wikigene:100244715	Gene3D:3.40.30.10	EMBL:AM442722	ProteinID:CAN63033
ProteinID:CAN63033.1	ProteinID:CCB51789	ProteinID:CCB51789.1	ncoils:Coil	InterPro:DC1	UniProt:F6HHV2
EMBL:FN595761	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
GO:GO:0098869	InterPro:IPR013766	EntrezGene:LOC100244715	wikigene:LOC100244715	PFAM:PF03107	PFAM:PF13905
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	SUPFAM:SSF52833	SUPFAM:SSF57889
TIGR:TC54204	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00015CCAE3
ArrayExpress:VIT_01s0127g00520	EnsemblPlantsGene:VIT_01s0127g00520	EnsemblPlants:VIT_01s0127g00520.t01	unigene:Vvi.25130	RefSeq:XP_002263480	RefSeq:XP_002263480.2
RefSeq:XP_010651408.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:7893914..7896340

Molecular Weight (calculated)

64967.7 Da

IEP (calculated)

6.105

GRAVY (calculated)

-0.398

Length

570 amino acids

Sequence
(BLAST)

001: MASENVDGVA HDLVPLLTRE DRDFLVRCNG HQVKVESLKG KKIWLYFSAS WCGPRRQFTP ELVEVYDEFS SKGDFEIIFV SRDKGDQLFN EYFSKMPWLA
101: IPFSDSDTRD HLKKLFKVRG IPSLAMLDES GKVLSSEGVE IIKDYGVEGY PFTAEKIKEL KEKEETAKKE QSLISILVSQ SRDYVISTDG KRVPVSELEG
201: KFVGLYFSLS SSKPRLQFTR TLVDVYKKLR AKGESFEIVM ISLDDEIESF KTNFGSMPWL ALPFKDRSCK KLARYFELSA LPTLVVIGPD GKTLHSNVAE
301: AIQEHGIQAY PFTPEKFAEL EEIEKAKREA QTLESILVSG NRDFVIGKDR VKIPVSDLVG KNILLYFSAH WCPPCRAFLP KLIEAYQNIK AKDEAFEVIF
401: ISSDRDQASF DEFFSGMPWL ALPFGDKRKA SLGRTFKVRS IPKLIAVEPT GRTVTTEART LVMIHGADAY PFTEEHIKEI EAQYEMAKGW PEKMKHALHE
501: EHELVLTKRG IYRCNGCEKQ GHLWSFYCEE CDFNLHPKCA LEEDKGSKED EEKARPGEGW KCDGEVCSRA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.