Factsheet for VIT_18s0001g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60996	Soybean	cytosol	62.82	63.12
Solyc04g081900.2.1	Tomato	cytosol	65.18	62.95
PGSC0003DMT400025576	Potato	cytosol	64.94	62.73
KRH51662	Soybean	cytosol	61.65	60.37
GSMUA_Achr9P11600_001	Banana	cytosol	49.88	53.0
Os01t0794400-01	Rice	cytosol, extracellular	45.88	49.49
TraesCS3A01G327100.1	Wheat	cytosol	45.65	49.49
Zm00001d012591_P001	Maize	cytosol	45.88	48.99
TraesCS3B01G356500.1	Wheat	cytosol	45.18	48.98
EES01593	Sorghum	cytosol	45.41	48.86
TraesCS3D01G320500.1	Wheat	cytosol	44.71	48.22
HORVU3Hr1G077930.16	Barley	endoplasmic reticulum	44.0	47.1
VIT_04s0008g02900.t01	Wine grape	cytosol	34.82	37.09
VIT_01s0127g00540.t01	Wine grape	mitochondrion	12.94	35.26
VIT_01s0127g00560.t01	Wine grape	cytosol	40.24	29.9
VIT_01s0127g00600.t01	Wine grape	cytosol	41.41	29.33
VIT_01s0127g00520.t01	Wine grape	cytosol	39.06	29.12
VIT_01s0127g00590.t01	Wine grape	cytosol	38.35	28.45
VIT_01s0127g00530.t01	Wine grape	cytosol	20.94	11.03

Protein Annotations

MapMan:10.6.3	EntrezGene:100262541	wikigene:100262541	Gene3D:3.40.30.10	ProteinID:CCB45415	ProteinID:CCB45415.1
InterPro:DC1	UniProt:F6H0E3	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	GO:GO:0098869	InterPro:IPR013766	EntrezGene:LOC100262541	wikigene:LOC100262541
PFAM:PF03107	PFAM:PF13905	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	SUPFAM:SSF52833
SUPFAM:SSF57889	TIGR:TC60636	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00015C7F8F
ArrayExpress:VIT_18s0001g01030	EnsemblPlantsGene:VIT_18s0001g01030	EnsemblPlants:VIT_18s0001g01030.t01	unigene:Vvi.3320	RefSeq:XP_002285895	RefSeq:XP_002285895.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:1712005..1715268

Molecular Weight (calculated)

48057.0 Da

IEP (calculated)

5.044

GRAVY (calculated)

-0.379

Length

425 amino acids

Sequence
(BLAST)

001: MRKEVKETTS FKSEDGSGAL NGVSDDLNYR SRFSSLLAST HRDFLLSPTG QQVKVSELND KVIGLYFSAN WYAPCRKFTQ VLAGAYEQLK SCGAGFEIVF
101: VSSDEDSDAF DNFRACMPWL AVPFSDLETK KALNRKFDIE GIPCLVILQP NDNKDEATLH DGVELIYRYG VNAFPFTKVR LEELRKEERE KHESQTLPNL
201: LTNHNRDFLL GRPTAKQVPI SSLIGKTIGL YFSAQWCLPG VKFTPKLISI YQKIKQTLVD DNEEDFEIVF VSSDRDQPSF DSYFGTMPWL AVPFGDPTIK
301: TLTKYFDVQG IPCLVILGPD GKTVTKQGRY LINLYQENAY PFTEAKLELL EKQMDEEAKS LPRSEYHAGH RHELTLVSEG TGGGPFICCD CDEQGLGWAY
401: QCLECGYEVH PKCMRVVDRG STLER

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.