Factsheet for VIT_04s0008g02900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52617	Soybean	cytosol	62.66	64.27
KRH61954	Soybean	cytosol	62.41	64.01
Bra011254.1-P	Field mustard	cytosol	61.15	62.56
CDY28251	Canola	cytosol	61.15	62.56
CDX68729	Canola	cytosol	60.9	62.47
AT4G31240.2	Thale cress	cytosol	59.9	60.97
EES12823	Sorghum	cytosol	54.14	55.53
Zm00001d018769_P001	Maize	endoplasmic reticulum, plasma membrane	35.59	47.49
Os04t0608600-01	Rice	cytosol, peroxisome	23.56	47.24
Zm00001d018942_P001	Maize	cytosol	38.1	47.2
Zm00001d011007_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	28.57	45.78
Zm00001d021986_P001	Maize	endoplasmic reticulum, plasma membrane	28.32	45.38
Zm00001d026266_P001	Maize	plastid	52.13	45.22
VIT_01s0127g00540.t01	Wine grape	mitochondrion	14.29	36.54
VIT_18s0001g01030.t01	Wine grape	cytosol	37.09	34.82
Zm00001d033946_P001	Maize	plastid	26.32	30.0
VIT_01s0127g00560.t01	Wine grape	cytosol	41.35	28.85
VIT_01s0127g00590.t01	Wine grape	cytosol	40.35	28.1
VIT_01s0127g00520.t01	Wine grape	cytosol	39.85	27.89
VIT_01s0127g00600.t01	Wine grape	cytosol	39.6	26.33
VIT_01s0127g00530.t01	Wine grape	cytosol	20.05	9.91

Protein Annotations

MapMan:10.6.3	EntrezGene:100257684	Gene3D:3.40.30.10	ProteinID:CCB46669	ProteinID:CCB46669.1	InterPro:DC1
UniProt:F6H2V8	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	GO:GO:0098869	InterPro:IPR013766	PFAM:PF03107	PFAM:PF13905	PFscan:PS51352
PANTHER:PTHR13871	PANTHER:PTHR13871:SF81	SUPFAM:SSF52833	SUPFAM:SSF57889	TIGR:TC61473	InterPro:Thioredoxin-like_fold
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00015C8452	ArrayExpress:VIT_04s0008g02900	EnsemblPlantsGene:VIT_04s0008g02900	EnsemblPlants:VIT_04s0008g02900.t01
unigene:Vvi.7624	RefSeq:XP_010648454.1	RefSeq:XP_019075186.1	:	:	:

Description

No Description!

Coordinates

chr4:+:2395600..2398920

Molecular Weight (calculated)

44743.5 Da

IEP (calculated)

4.874

GRAVY (calculated)

-0.133

Length

399 amino acids

Sequence
(BLAST)

001: MAGPDLGVES VDSNDIITVL ASEGIEFLLS GEGKVSLSST EGKMICLFFS ANWCRPCRTF TPQLVQIYNS LIKTGRMIEI IFISFDRDET GFGEHFKSMP
101: WLAVPFNVDL HRRLSDHYHV DHIPSFIPLG LDGKSIEEDA IGLIEDYGAS AFPFTSQRRE ELKAMDNAKR QGGKLEELLA NEGRNHVISS SGREILVSEL
201: VGKTIGLYFA AHWCPPCRAF TAQLIEAYNK LVATRNQCFE IIFVSTDRDH QEFDLSLSNM PWLAIPYEDK ARQDLCRIFD IKGIPALVLL GSDGKTISTN
301: GRAIISSYGA MAFPFTESRT TEIEAALKEE GDALPRQVKD LKHEHILKLD MAKAYVCDSC KKLGRFWAFS CDVCDYDLHP TCVEEKQETY LEDPVMGLV

Best Arabidopsis Sequence Match ( AT4G31240.1 )
(BLAST)

001: MAVSADYQVK FPESGDLYSI LAAEGIEFLL SHSGEVPLEY IHGKTICLFF SAIWCRPCKD FTPELIKLYE NLQNRGEELE IIFVSFDHDM TSFYEHFWCM
101: PWLAVPFNLS LLNKLRDKYG ISRIPSLVPL YSDEISVAED VIGLIEDYGS EAFPFTKKRK EELKAIDDSK RLGGQLEKLL THESRNYVVA RNGSKVLVSK
201: LVGKTIGLYF GAHWCPPFRS FTSQLVDVYN ELATTDKGSF EVILISTDRD SREFNINMTN MPWLAIPYED RTRQDLCRIF NVKLIPALVI IGPEEKTVTT
301: NAREMVSLYG SRSFPFTESR IVELKACLKK EGDSLPRKVK DNKHEHELKL DMAKAYVCDF CKKQGRFWAF SCNACDYDLH PTCVEEEEAL LV

Arabidopsis Description

Probable nucleoredoxin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.