CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011254.1-P	Field mustard	cytosol	100.0	100.0
CDX68729	Canola	cytosol	97.44	97.69
AT4G31240.2	Thale cress	cytosol	87.95	87.5
VIT_04s0008g02900.t01	Wine grape	cytosol	62.56	61.15
KRH52617	Soybean	cytosol	59.23	59.38
KRH61954	Soybean	cytosol	58.72	58.87
EES12823	Sorghum	cytosol	48.46	48.59
Zm00001d018942_P001	Maize	cytosol	36.92	44.72
Zm00001d018769_P001	Maize	endoplasmic reticulum, plasma membrane	33.59	43.81
Zm00001d011007_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	27.95	43.78
Zm00001d021986_P001	Maize	endoplasmic reticulum, plasma membrane	27.95	43.78
Zm00001d026266_P001	Maize	plastid	49.23	41.74
Os04t0608600-01	Rice	cytosol, peroxisome	20.51	40.2
CDY24527	Canola	cytosol	41.03	27.68
CDY60573	Canola	cytosol	40.77	27.51
Zm00001d033946_P001	Maize	plastid	24.62	27.43

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	GO:A0A078GRY6	UniProt:A0A078GRY6	EnsemblPlants:CDY28251	ProteinID:CDY28251
ProteinID:CDY28251.1	InterPro:DC1	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00039986001	InterPro:IPR013766	PFAM:PF03107	PFAM:PF13905
PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF81	SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00025469E0	:	:	:

Description

BnaA01g05980DBnaA01g05980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRY6]

Coordinates

chrLK032216:-:470999..472927

Molecular Weight (calculated)

44929.7 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.274

Length

390 amino acids

Sequence
(BLAST)

001: MAVTADYQVQ FPENDDIYSI LAAEGIEFLL SHSGEVPLEY IHGKTICLFF SANWCRPCKD FTPELVKLYE SLQKRGEELE IIFVSFDHDM TLFYEHFWSM
101: PWLAVPFSLS LRNKLTDKYR VARIPSLVPL YPDEISVADD VIGLIEDYGP EAFPFTKKRK EELKAIDESK RVGGQLEKLL THETRSYVVS RNGSKVLVSD
201: LVGKTIGLYF GAHWCPPFRS FTSQLIDVYN ELTISTKGSF EVILVSTDRD AREFNINMTN MPWLAIPYED RTRQDLCRIF NIKLIPALVI IGPEEKTVCT
301: NAREMVSLYG SRSYPFTESR VAELEACLKK EGDSFPRKVK DKKHEHELKL DMAKGYVCDF CKKQGKFWAF SCDACDYDLH PTCVEEQEEQ

Best Arabidopsis Sequence Match ( AT4G31240.1 )
(BLAST)

001: MAVSADYQVK FPESGDLYSI LAAEGIEFLL SHSGEVPLEY IHGKTICLFF SAIWCRPCKD FTPELIKLYE NLQNRGEELE IIFVSFDHDM TSFYEHFWCM
101: PWLAVPFNLS LLNKLRDKYG ISRIPSLVPL YSDEISVAED VIGLIEDYGS EAFPFTKKRK EELKAIDDSK RLGGQLEKLL THESRNYVVA RNGSKVLVSK
201: LVGKTIGLYF GAHWCPPFRS FTSQLVDVYN ELATTDKGSF EVILISTDRD SREFNINMTN MPWLAIPYED RTRQDLCRIF NVKLIPALVI IGPEEKTVTT
301: NAREMVSLYG SRSFPFTESR IVELKACLKK EGDSLPRKVK DNKHEHELKL DMAKAYVCDF CKKQGRFWAF SCNACDYDLH PTCVEEEEAL LV

Arabidopsis Description

Probable nucleoredoxin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.