Factsheet for Zm00001d033946_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011007_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	46.57	65.46
Zm00001d021986_P001	Maize	endoplasmic reticulum, plasma membrane	46.29	65.06
Zm00001d018942_P001	Maize	cytosol	57.43	62.42
Zm00001d018769_P001	Maize	endoplasmic reticulum, plasma membrane	52.57	61.54
Os04t0608600-01	Rice	cytosol, peroxisome	28.86	50.75
Zm00001d026266_P001	Maize	plastid	60.57	46.09
EES12823	Sorghum	cytosol	50.86	45.76
VIT_04s0008g02900.t01	Wine grape	cytosol	30.0	26.32
KRH52617	Soybean	cytosol	28.86	25.96
KRH61954	Soybean	cytosol	28.0	25.19
AT4G31240.2	Thale cress	cytosol	28.0	25.0
CDX68729	Canola	cytosol	27.43	24.68
Bra011254.1-P	Field mustard	cytosol	27.43	24.62
CDY28251	Canola	cytosol	27.43	24.62
Zm00001d012591_P001	Maize	cytosol	22.57	19.85
Zm00001d029457_P001	Maize	extracellular	25.71	15.82
Zm00001d029459_P001	Maize	cytosol	24.86	15.0

Protein Annotations

Gene3D:3.30.50.10	Gene3D:3.40.30.10	MapMan:35.1	UniProt:A0A1D6L3K1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872
InterPro:IPR000679	InterPro:IPR013088	ProteinID:ONM09021.1	PFAM:PF00320	PFAM:PF13905	PFscan:PS50114
PANTHER:PTHR13871	PANTHER:PTHR13871:SF81	SMART:SM00401	SUPFAM:SSF52833	SUPFAM:SSF57716	InterPro:Thioredoxin-like_fold
InterPro:Thioredoxin-like_sf	UniParc:UPI0008450160	EnsemblPlantsGene:Zm00001d033946	EnsemblPlants:Zm00001d033946_P001	EnsemblPlants:Zm00001d033946_T001	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	SEG:seg	:	:	:	:

Description

Probable nucleoredoxin 3

Coordinates

chr1:-:279355732..279357564

Molecular Weight (calculated)

38620.5 Da

IEP (calculated)

9.261

GRAVY (calculated)

-0.369

Length

350 amino acids

Sequence
(BLAST)

001: MCLQCGAAVT PQWRSGPMGQ GTLCNAYRVR LKVAGVLRDQ VKHRPTPATA RTPARPPLDS PASGGKGRST LCNACGVRYR QGRLLPEYRP LASPTFEPSE
101: HANKHSQVMQ LHRQRKSQGQ HHPLPAEHPR AMDVLQFPQR WQAYTALRSA GKSVEIIFVS LDRDEASFRD HFQGMSWLAV PFDAAGLLRQ KLCARFAIER
201: IPALIPLSAS ATPSSGLGCG EDAVRLVGEY GVDAYPFSAQ RRRELESMDD ARRGGGRLQE LLGCEERDYV ISADDIKIPI ADLAGKTVGL YFGAHWCPPC
301: HVFTKQLKEV YNELKILRPG IPGLLILGLD GKALKTDVHR PELLPTYEGS

Best Arabidopsis Sequence Match ( AT4G31240.1 )
(BLAST)

001: MAVSADYQVK FPESGDLYSI LAAEGIEFLL SHSGEVPLEY IHGKTICLFF SAIWCRPCKD FTPELIKLYE NLQNRGEELE IIFVSFDHDM TSFYEHFWCM
101: PWLAVPFNLS LLNKLRDKYG ISRIPSLVPL YSDEISVAED VIGLIEDYGS EAFPFTKKRK EELKAIDDSK RLGGQLEKLL THESRNYVVA RNGSKVLVSK
201: LVGKTIGLYF GAHWCPPFRS FTSQLVDVYN ELATTDKGSF EVILISTDRD SREFNINMTN MPWLAIPYED RTRQDLCRIF NVKLIPALVI IGPEEKTVTT
301: NAREMVSLYG SRSFPFTESR IVELKACLKK EGDSLPRKVK DNKHEHELKL DMAKAYVCDF CKKQGRFWAF SCNACDYDLH PTCVEEEEAL LV

Arabidopsis Description

Probable nucleoredoxin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.