CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52617	Soybean	cytosol	95.12	95.12
VIT_04s0008g02900.t01	Wine grape	cytosol	64.01	62.41
Bra011254.1-P	Field mustard	cytosol	58.87	58.72
CDY28251	Canola	cytosol	58.87	58.72
CDX68729	Canola	cytosol	58.61	58.61
AT4G31240.2	Thale cress	cytosol	58.35	57.91
EES12823	Sorghum	cytosol	49.36	49.36
Zm00001d018769_P001	Maize	endoplasmic reticulum, plasma membrane	33.16	43.14
Zm00001d018942_P001	Maize	cytosol	35.48	42.86
Zm00001d011007_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	26.74	41.77
Zm00001d021986_P001	Maize	endoplasmic reticulum, plasma membrane	26.74	41.77
Zm00001d026266_P001	Maize	plastid	48.59	41.09
Os04t0608600-01	Rice	cytosol, peroxisome	20.82	40.7
KRH51662	Soybean	cytosol	37.02	33.18
KRH60996	Soybean	cytosol	35.99	33.1
Zm00001d033946_P001	Maize	plastid	25.19	28.0
KRH45656	Soybean	cytosol, nucleus	36.76	25.09

Protein Annotations

MapMan:10.6.3	EntrezGene:100791971	Gene3D:3.40.30.10	EMBL:ACUP02002203	InterPro:DC1	EnsemblPlantsGene:GLYMA_04G076900
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	GO:GO:0098869
UniProt:I1JUN8	InterPro:IPR013766	EnsemblPlants:KRH61954	ProteinID:KRH61954	ProteinID:KRH61954.1	ProteinID:KRH61955.1
ProteinID:KRH61956.1	PFAM:PF03107	PFAM:PF13905	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF81
SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002339362

Description

hypothetical protein

Coordinates

chr4:-:6467994..6470562

Molecular Weight (calculated)

44340.1 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.253

Length

389 amino acids

Sequence
(BLAST)

001: MAGLNFEATH TDNRDILKIF AAEGVEFLLS CEGKVPVSEC NGKIICLFFT ANWCRPCRAF VPRLVELYET LRKRRINLEI IFISFDRDED GFKEHFKNMP
101: WLAVPFDLNL HRRLIDRYQV DRIPSFVPSC SDGITIEEDL IGCIEDYGAD AFPFTRKRHE ELKGIDIRKR EEADLEELLG HEGGKFLISG DDRKVPLSEL
201: AGKTIGLYFG AYWSPPCCAF TVQLTDAYNN LKAAKGDCFE IVLISTDRDL EEFNVNKSTM PWLAVPYEDR TRHDLRRIFD VKGIPALVLI GPDGKVISVN
301: GKLMVSSYGA EAFPFTESRI RDLEAALRKE GEALPPQVED VKHEHVLKLD MAKAYVCDSC KKQGKFWTFS CDVCDYDLHP SCLEKVNKD

Best Arabidopsis Sequence Match ( AT4G31240.1 )
(BLAST)

001: MAVSADYQVK FPESGDLYSI LAAEGIEFLL SHSGEVPLEY IHGKTICLFF SAIWCRPCKD FTPELIKLYE NLQNRGEELE IIFVSFDHDM TSFYEHFWCM
101: PWLAVPFNLS LLNKLRDKYG ISRIPSLVPL YSDEISVAED VIGLIEDYGS EAFPFTKKRK EELKAIDDSK RLGGQLEKLL THESRNYVVA RNGSKVLVSK
201: LVGKTIGLYF GAHWCPPFRS FTSQLVDVYN ELATTDKGSF EVILISTDRD SREFNINMTN MPWLAIPYED RTRQDLCRIF NVKLIPALVI IGPEEKTVTT
301: NAREMVSLYG SRSFPFTESR IVELKACLKK EGDSLPRKVK DNKHEHELKL DMAKAYVCDF CKKQGRFWAF SCNACDYDLH PTCVEEEEAL LV

Arabidopsis Description

Probable nucleoredoxin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.