CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51662	Soybean	cytosol	91.96	89.63
VIT_18s0001g01030.t01	Wine grape	cytosol	63.12	62.82
PGSC0003DMT400025576	Potato	cytosol	58.16	55.91
Solyc04g081900.2.1	Tomato	cytosol	58.16	55.91
GSMUA_Achr9P11600_001	Banana	cytosol	47.04	49.75
TraesCS3A01G327100.1	Wheat	cytosol	42.08	45.41
TraesCS3D01G320500.1	Wheat	cytosol	42.08	45.18
TraesCS3B01G356500.1	Wheat	cytosol	41.84	45.15
Os01t0794400-01	Rice	cytosol, extracellular	41.84	44.92
Zm00001d012591_P001	Maize	cytosol	42.08	44.72
EES01593	Sorghum	cytosol	41.37	44.3
HORVU3Hr1G077930.16	Barley	endoplasmic reticulum	41.13	43.83
KRH61954	Soybean	cytosol	33.1	35.99
KRH52617	Soybean	cytosol	32.86	35.73
KRH45656	Soybean	cytosol, nucleus	40.19	29.82

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	EMBL:ACUP02002143	InterPro:DC1	EnsemblPlantsGene:GLYMA_04G021000	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0035556	GO:GO:0045454	GO:GO:0046872	GO:GO:0098869	UniProt:I1JSZ5	InterPro:IPR002219
InterPro:IPR013766	EnsemblPlants:KRH60996	ProteinID:KRH60996	ProteinID:KRH60996.1	InterPro:PE/DAG-bd	PFAM:PF03107
PFAM:PF13905	PFscan:PS50081	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF57	SUPFAM:SSF52833
SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002339C41	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:1653057..1659760

Molecular Weight (calculated)

47768.8 Da

IEP (calculated)

5.993

GRAVY (calculated)

-0.335

Length

423 amino acids

Sequence
(BLAST)

001: MKAEMKDGAP QVVMNHNGNH GKFSHLLASQ DRDYLLSPTG AQVKVSDLEG KVVGLLFAAN WYPPCRGFTQ VLAGIYEELK SRVPQFEIVY VSSDEDLNAF
101: NSFYGSMPWI AIPFSDLETK KSLTRKFDVE AVPCLILLQP DDRKEHATVR DGVELIYRYG IQAYPFSKDR LEQLQKEDKV KRDNQTLTNL LANHHRDYVL
201: SHTHTGLKKV PVASLVGKTI GLYFSAEWCV PCAKFTPKLI SVYEKIKHEL AEKGEEDFEV VLISSDRDQA SFDSYYSTMP WLALPFGDPE IKNLVRHYNV
301: QGIPWLVIIG PDGKTITVHG RSLINLYQEN AYPFTKAKVE ELEKQLEEEA KGLPALVYHQ GHRHDLNLVS DGNGGGPFIC CVCDEQGSSW AYQCLQCGYE
401: VHPKCVRTVE RDDNVLVDTT GCF

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.