CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60996	Soybean	cytosol	89.63	91.96
VIT_18s0001g01030.t01	Wine grape	cytosol	60.37	61.65
PGSC0003DMT400025576	Potato	cytosol	55.53	54.77
Solyc04g081900.2.1	Tomato	cytosol	55.3	54.55
GSMUA_Achr9P11600_001	Banana	cytosol	45.16	49.0
Os01t0794400-01	Rice	cytosol, extracellular	40.55	44.67
TraesCS3D01G320500.1	Wheat	cytosol	39.86	43.91
TraesCS3A01G327100.1	Wheat	cytosol	39.63	43.88
TraesCS3B01G356500.1	Wheat	cytosol	39.4	43.62
Zm00001d012591_P001	Maize	cytosol	39.4	42.96
EES01593	Sorghum	cytosol	38.94	42.78
HORVU3Hr1G077930.16	Barley	endoplasmic reticulum	38.48	42.07
KRH61954	Soybean	cytosol	33.18	37.02
KRH52617	Soybean	cytosol	32.95	36.76
KRH45656	Soybean	cytosol, nucleus	38.71	29.47

Protein Annotations

MapMan:10.6.3	EntrezGene:100808125	Gene3D:3.40.30.10	EMBL:ACUP02003383	InterPro:DC1	EnsemblPlantsGene:GLYMA_06G021200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	GO:GO:0098869
UniProt:I1K7G6	InterPro:IPR013766	EnsemblPlants:KRH51662	ProteinID:KRH51662	ProteinID:KRH51662.1	PFAM:PF03107
PFAM:PF13905	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF57	SUPFAM:SSF52833	SUPFAM:SSF57889
InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000233A8E4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:1600041..1607393

Molecular Weight (calculated)

49182.5 Da

IEP (calculated)

5.581

GRAVY (calculated)

-0.327

Length

434 amino acids

Sequence
(BLAST)

001: MKDGAQVVLN DNGNYGKFSH LLASQDRDYL LSPTGAQVKV SDLEGRVVGL LFAANWYPPC RGFTQILVGI YEELKSRVPQ LEIVYVSSDE NLDAFNSFYG
101: NMPWLAIPFS DLETKKSLTR KYDVEAVPCL ILLQPDDRKE HVTVRDGVEL IYRYGIQAYP FSNERLEQLQ KEDKVKRDNQ TLTNLLANHH RDYVLSHTHT
201: GLKKFYLNCM QRIMDPVPGD GCCSCTQVPV AWLVGKTIGL YFSAEWCVPC AKFTPKLISV YEKIKHELAG KGEEDFEVVL ISSDRDQASF DSYYSTMPWL
301: ALPFGDPEIK NLVRHYNVQG IPWLVIIGPD GKTITVHGRS LINLYQENAY PFTNAKVEEL EKQLEEEAKG LPALVYHEGH RHDLNLVSDG NGGGPFICCV
401: CDEQGSSWAY QCLQCGYEVH PKCVRTVERH DNNV

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.