Factsheet for PGSC0003DMT400025576

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081900.2.1	Tomato	cytosol	94.77	94.77
VIT_18s0001g01030.t01	Wine grape	cytosol	62.73	64.94
KRH60996	Soybean	cytosol	55.91	58.16
KRH51662	Soybean	cytosol	54.77	55.53
GSMUA_Achr9P11600_001	Banana	cytosol	46.36	51.0
Os01t0794400-01	Rice	cytosol, extracellular	42.05	46.95
TraesCS3D01G320500.1	Wheat	cytosol	41.36	46.19
TraesCS3A01G327100.1	Wheat	cytosol	41.14	46.17
TraesCS3B01G356500.1	Wheat	cytosol	40.68	45.66
HORVU3Hr1G077930.16	Barley	endoplasmic reticulum	39.55	43.83
EES01593	Sorghum	cytosol	39.32	43.8
Zm00001d012591_P001	Maize	cytosol	39.32	43.47
PGSC0003DMT400079607	Potato	cytosol	12.05	40.15
PGSC0003DMT400079611	Potato	cytosol	36.82	28.08

Protein Annotations

MapMan:10.6.3	EntrezGene:102580139	Gene3D:3.40.30.10	InterPro:DC1	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	UniProt:M1ALM9
PFAM:PF03107	PFAM:PF13905	EnsemblPlantsGene:PGSC0003DMG400009882	PGSC:PGSC0003DMG400009882	EnsemblPlants:PGSC0003DMT400025576	PFscan:PS51352
PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	SUPFAM:SSF52833	SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0002960E57	RefSeq:XP_006342078.1	SEG:seg	:	:

Description

Nucleoredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400009882]

Coordinates

chr4:+:71183517..71186553

Molecular Weight (calculated)

50022.4 Da

IEP (calculated)

5.257

GRAVY (calculated)

-0.424

Length

440 amino acids

Sequence
(BLAST)

001: MEELEKKNIT SIKEEEAEEE IDNSFVPVYH SFASKKYHSH LVSDDYLSIL ASKDGDFLLS PTGAQVKVSE LEGKVVGLYF SANWYSPCTK FTNLLVNVYQ
101: QLKECNNINL GFEIVFVSSD ENLNAFNTYR SSMPWFAIPF SDLEKRRALT QKFDVEGIPC MIILQPNDDK LDTAVIKDGV ELVYRYGVQA FPFTKERLDE
201: LREKEKEKRD NQTLSNLLTH DARDVLLGNP SPKQVSVASL KGKTVGLYFS AQWCIPAKKF TPRLISVYKK IKQQLEGKED EDFEIVFVSS DHNQVDFTTY
301: FETMPWLAIP FDDPTINALA KYFDIRGIPS LVILGPDGKT VTKQGRSLIN LYKENAYPFT KTRVGILEKQ MNEIAKGLPK TENHSGHRHE LTLVPEGHGG
401: GAFICCDCDE QGYGWAYQCL ECGYEVHPKC VNPVRRDPDN

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.