Factsheet for Solyc04g081900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025576	Potato	cytosol	94.77	94.77
VIT_18s0001g01030.t01	Wine grape	cytosol	62.95	65.18
KRH60996	Soybean	cytosol	55.91	58.16
KRH51662	Soybean	cytosol	54.55	55.3
GSMUA_Achr9P11600_001	Banana	cytosol	46.82	51.5
Os01t0794400-01	Rice	cytosol, extracellular	42.95	47.97
TraesCS3D01G320500.1	Wheat	cytosol	42.05	46.95
TraesCS3A01G327100.1	Wheat	cytosol	41.82	46.94
TraesCS3B01G356500.1	Wheat	cytosol	41.36	46.43
EES01593	Sorghum	cytosol	40.45	45.06
Zm00001d012591_P001	Maize	cytosol	40.45	44.72
HORVU3Hr1G077930.16	Barley	endoplasmic reticulum	40.23	44.58
Solyc05g005470.2.1	Tomato	cytosol	37.27	30.37
Solyc05g005460.2.1	Tomato	cytosol	35.91	27.19

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	InterPro:DC1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	GO:GO:0098869	InterPro:IPR013766	UniProt:K4BVR9	PFAM:PF03107
PFAM:PF13905	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	SUPFAM:SSF52833	SUPFAM:SSF57889
EnsemblPlantsGene:Solyc04g081900.2	EnsemblPlants:Solyc04g081900.2.1	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000276627B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:65763894..65766816

Molecular Weight (calculated)

49931.2 Da

IEP (calculated)

5.254

GRAVY (calculated)

-0.415

Length

440 amino acids

Sequence
(BLAST)

001: MEELEKKNIT SMKEEEAEEE IDNSFVPVYH SFASKSYHSH LVSDDYLSIL ASKDGEFLLS PTGAQVKVSE LEGKVVGLYF SANWYSPCTK FTNLLVNVYQ
101: QLKECSNINL GFEIVFVSSD EDLNAFNTYR SSMPWLAIPF SDLETRRALT QKFDVEGIPC LIVLLPNDDK LDTAVIKDGV ELVYRYGVQA FPFTKERLDE
201: LRKKEKEKRD NQTLSSLLTH DARDVLSGHP SPKQVSVASL KGKTVGLYFS AQWCNPAKKF TPRLISVYKK IKQQLEGKDD EDFEIVFVSS DHNQVDFTTY
301: FETMPWLAIP FDDPTIKALA KYFDIRGIPS LVILGPDGKT VTKQGRSLIN LYKENAYPFT KTRIDILEKQ MDEIAKGLPK TENHSGHRHE LTLVPEGHGG
401: GAFICCDCDE QGYGWAYQCL ECGYEVHPKC VKPVRHDPEN

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.