CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031513.1-P	Field mustard	cytosol	99.48	99.48
CDY60573	Canola	cytosol	97.58	97.58
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	87.02	87.02
VIT_01s0127g00560.t01	Wine grape	cytosol	66.26	66.96
VIT_01s0127g00540.t01	Wine grape	mitochondrion	17.65	65.38
KRH45656	Soybean	cytosol, nucleus	63.67	64.56
VIT_01s0127g00590.t01	Wine grape	cytosol	62.8	63.35
VIT_01s0127g00520.t01	Wine grape	cytosol	61.59	62.46
PGSC0003DMT400079611	Potato	cytosol	60.9	61.01
GSMUA_Achr3P10290_001	Banana	cytosol	60.73	59.39
VIT_01s0127g00600.t01	Wine grape	cytosol	61.07	58.83
Solyc05g005460.2.1	Tomato	cytosol	57.61	57.31
TraesCS2B01G489600.3	Wheat	cytosol	53.46	55.38
Os03t0405500-01	Rice	plasma membrane	54.5	55.36
Os03t0405900-01	Rice	cytosol, plastid	54.84	54.56
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	54.33	54.42
Zm00001d029457_P001	Maize	extracellular	53.11	53.95
TraesCS2A01G466800.1	Wheat	cytosol	48.79	53.82
HORVU2Hr1G103310.2	Barley	cytosol	53.46	53.55
EER94707	Sorghum	cytosol	53.63	53.08
OQU92417	Sorghum	cytosol	50.17	49.49
Zm00001d029459_P001	Maize	cytosol	49.65	49.48
CDY28251	Canola	cytosol	27.68	41.03
CDX68729	Canola	cytosol	26.99	40.1
VIT_01s0127g00530.t01	Wine grape	cytosol	28.2	20.2

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	GO:A0A078GHA4	UniProt:A0A078GHA4	EnsemblPlants:CDY24527	ProteinID:CDY24527
ProteinID:CDY24527.1	ncoils:Coil	InterPro:DC1	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00026836001	InterPro:IPR013766	PFAM:PF03107
PFAM:PF13905	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	SUPFAM:SSF52833
SUPFAM:SSF57889	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0004EF2468
SEG:seg	:	:	:	:	:

Description

BnaA01g22310DBnaA01g22310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHA4]

Coordinates

chrLK032160:+:356447..358771

Molecular Weight (calculated)

65237.0 Da

IEP (calculated)

4.552

GRAVY (calculated)

-0.447

Length

578 amino acids

Sequence
(BLAST)

001: MAEIAKEVNG GDARDLHSLL SSPARDFLIR NNGEQVKIES LKGKKIGLYF SAAWCGPCQR FTPQLVDIYN ELSSNVGFEV VFVSGDEDED SFKDYFSKMP
101: WLAVPFTDSE TRDRLDEVFK VRGIPNLVMI DDEGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEEEERA RREQTLRSVL VTPSRDFVIT RDGNKVPVSQ
201: LEGKTIGLLF SVASYRQCKE FTSKLEEVYQ KLKENNEDFE IVLISLEDDE EAFKQDFETN PWLALPFNDK SSSKLTRHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV VAYPFTPEKF EELKAIEKGK LEAQTLESLL VSGDLNYVLG KDGAKVLVSE LVGKNILLYF SAHWCPPCRG FTPKLVEVYK QIKEKDEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKTSLARTFK VGGIPMLAAL GPTGKTVTKE ARDLVGAHGA DAYPFTEERV KEIEAKYTEM AKEWPEKVKH
501: VLHEEHELEL TRVPVYICDK CDEEGQIWSY HCDECDFDLH AKCALKEDAN INGDDAVKEG GGESQDGWVC DGNVCTKS

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.