Factsheet for VIT_01s0127g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0127g00560.t01	Wine grape	cytosol	97.44	26.57
VIT_01s0127g00520.t01	Wine grape	cytosol	88.46	24.21
VIT_01s0127g00590.t01	Wine grape	cytosol	85.26	23.21
GSMUA_Achr3P10290_001	Banana	cytosol	68.59	18.1
PGSC0003DMT400079611	Potato	cytosol	66.67	18.02
CDY60573	Canola	cytosol	66.67	17.99
TraesCS2A01G466800.1	Wheat	cytosol	60.26	17.94
KRH45656	Soybean	cytosol, nucleus	65.38	17.89
Solyc05g005460.2.1	Tomato	cytosol	66.03	17.73
VIT_01s0127g00600.t01	Wine grape	cytosol	67.95	17.67
Bra031513.1-P	Field mustard	cytosol	65.38	17.65
CDY24527	Canola	cytosol	65.38	17.65
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	65.38	17.65
HORVU2Hr1G103310.2	Barley	cytosol	60.26	16.29
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	59.62	16.12
Zm00001d029457_P001	Maize	extracellular	57.69	15.82
TraesCS2B01G489600.3	Wheat	cytosol	56.41	15.77
EER94707	Sorghum	cytosol	58.97	15.75
Os03t0405500-01	Rice	plasma membrane	56.41	15.47
Os03t0405900-01	Rice	cytosol, plastid	56.41	15.15
VIT_04s0008g02900.t01	Wine grape	cytosol	36.54	14.29
Zm00001d029459_P001	Maize	cytosol	51.28	13.79
OQU92417	Sorghum	cytosol	49.36	13.14
VIT_18s0001g01030.t01	Wine grape	cytosol	35.26	12.94
VIT_01s0127g00530.t01	Wine grape	cytosol	1.28	0.25

Protein Annotations

EntrezGene:104879710	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CCB51788	ProteinID:CCB51788.1	InterPro:DC1
UniProt:F6HHV1	EMBL:FN595761	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0098869
PFAM:PF03107	PANTHER:PTHR13871	PANTHER:PTHR13871:SF85	SUPFAM:SSF57889	UniParc:UPI00021084B0	ArrayExpress:VIT_01s0127g00540
EnsemblPlantsGene:VIT_01s0127g00540	EnsemblPlants:VIT_01s0127g00540.t01	RefSeq:XP_019075736.1	:	:	:

Description

No Description!

Coordinates

chr1:-:7926174..7927275

Molecular Weight (calculated)

17772.1 Da

IEP (calculated)

5.840

GRAVY (calculated)

-0.668

Length

156 amino acids

Sequence
(BLAST)

001: MPWLALPFGD KRKASLSRTF KVHGIPSLIA IGPTGRTVTT EARNLVMIHG ADAYPFTEEH IKEIEAQYEE MAKGWPEKMK HALHEEHELV LTKRRVYGCN
101: GCEKQGHLWS FYCEECDFDL HPKCALEEDK GTKDDEMEKA SPGEGWKCDG EVCYKA

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.