CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029457_P001	Maize	extracellular	89.55	91.92
HORVU2Hr1G103310.2	Barley	cytosol	78.42	79.38
TraesCS2D01G466800.2	Wheat	cytosol, golgi, unclear	77.91	78.86
TraesCS2A01G466800.1	Wheat	cytosol	70.72	78.82
TraesCS2B01G489600.3	Wheat	cytosol	75.17	78.67
Os03t0405500-01	Rice	plasma membrane	75.51	77.5
Zm00001d029459_P001	Maize	cytosol	76.2	76.72
Os03t0405900-01	Rice	cytosol, plastid	76.03	76.42
OQU92417	Sorghum	cytosol	66.1	65.87
VIT_01s0127g00540.t01	Wine grape	mitochondrion	15.75	58.97
VIT_01s0127g00560.t01	Wine grape	cytosol	56.51	57.69
GSMUA_Achr3P10290_001	Banana	cytosol	57.02	56.35
KRH45656	Soybean	cytosol, nucleus	54.45	55.79
VIT_01s0127g00520.t01	Wine grape	cytosol	53.94	55.26
AT1G60420.1	Thale cress	cytosol, nucleus, peroxisome	54.62	55.19
VIT_01s0127g00590.t01	Wine grape	cytosol	53.77	54.8
CDY60573	Canola	cytosol	53.6	54.15
Bra031513.1-P	Field mustard	cytosol	53.25	53.81
CDY24527	Canola	cytosol	53.08	53.63
PGSC0003DMT400079611	Potato	cytosol	51.88	52.51
VIT_01s0127g00600.t01	Wine grape	cytosol	53.94	52.5
Solyc05g005460.2.1	Tomato	cytosol	50.51	50.77
EES12823	Sorghum	cytosol	25.51	38.3
EES01593	Sorghum	cytosol	25.34	37.47
VIT_01s0127g00530.t01	Wine grape	cytosol	22.26	16.11

Protein Annotations

MapMan:10.6.3	Gene3D:3.40.30.10	EntrezGene:8080431	UniProt:C5WWQ2	ncoils:Coil	InterPro:DC1
EnsemblPlants:EER94707	ProteinID:EER94707	ProteinID:EER94707.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	GO:GO:0098869	InterPro:IPR013766	PFAM:PF03107	PFAM:PF13905
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR13871	PANTHER:PTHR13871:SF57	EnsemblPlantsGene:SORBI_3001G342600	SUPFAM:SSF52833
SUPFAM:SSF57889	unigene:Sbi.14184	InterPro:Thioredoxin-like_fold	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0001A83218	RefSeq:XP_002467709.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:62989655..62994020

Molecular Weight (calculated)

64778.7 Da

IEP (calculated)

4.470

GRAVY (calculated)

-0.301

Length

584 amino acids

Sequence
(BLAST)

001: MAEAEAEAAP AAAAGGGGIG DILATAERDF LVRNSGEQVK ISSIEASPVA IYFSASWCPP CRRFTPKLIE VYKELAEQGK SFEVIFASAD QNEEGFNEYF
101: AKMPWLAVPF SDTEGRAALD ARFKVSGIPH LVILDAKTGE VYTEDGVEFV SEYGVEAYPF TPDRINELKE QEKAEKENQT IQSVLGTSTR DYLISNKGDK
201: VPISELEGKY VGLCFVVDGY GPVIEFTDSL AKIYEKLKEV GEKFEVVAVS LDSEESAFNE SFAKMPWLAI PQGDQKCEKL VRYFELRSLP TLVLIGPDGK
301: TLNSNVADII DEHGFEAWEG FPFSAEKLEI LAEKAKAKAA SQTLESLLIS GDLDFVIGKG GAKVPVSELV GKTVLLYFSA KWCGPCRAFL PTLVKEYNKI
401: KEKNSDFEIV FISSDRDQSS FDDFFSQMPW LALPLEDERK VSLKKTFKIR GIPSLVAIGP TGQTVSRDAK AQLMIHGADA FPFTEERLEE LQKKLDEMAK
501: GWPQKLKHEL HDEHELVLLR RGTYGCDGCE EMGSTWSYRC DECDFDLHPK CALAEEKKGE EEEGKSTEEA PAGYVCEEGV CRKV

Best Arabidopsis Sequence Match ( AT1G60420.1 )
(BLAST)

001: MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP
101: WLAVPFTDSE TRDRLDELFK VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DAYPFTPEKM KEIKEDEDRA RRGQTLRSVL VTPSRDFVIS PDGNKVPVSE
201: LEGKTIGLLF SVASYRKCTE LTPKLVEFYT KLKENKEDFE IVLISLEDDE ESFNQDFKTK PWLALPFNDK SGSKLARHFM LSTLPTLVIL GPDGKTRHSN
301: VAEAIDDYGV LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF SAHWCPPCRA FTPKLVEVYK QIKERNEAFE
401: LIFISSDRDQ ESFDEYYSQM PWLALPFGDP RKASLAKTFK VGGIPMLAAL GPTGQTVTKE ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH
501: VLHEEHELEL TRVQVYTCDK CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

Arabidopsis Description

Probable nucleoredoxin 1 [Source:UniProtKB/Swiss-Prot;Acc:O80763]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.